Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22762 118 4e-21 seq195 114 5e-20 seq3475 107 8e-18 seq32895 102 3e-16 seq8895 89.7 2e-12 seq19263 86.0 2e-11 seq12979 86.0 2e-11 >seq22762 Length=2761 Score = 118 bits (130), Expect = 4e-21 Identities = 124/162 (77%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 383401 ATGTAT-TATATCAATATGGCTGGTGGCTTAATGCAACTCGTGGCTTATGGTGCTCAAGA 383459 |||||| ||| || |||| || || |||||||||||||| ||||||||||||||||| Sbjct 336 ATGTATATATTAAAACATGGGAGGAGGATTAATGCAACTCGTCGCTTATGGTGCTCAAGA 395 Query 383460 CGTATACCTAACAGGATCTCCTGAAGTAACTTTCTTCAAAAATATCTACCGCAGACACAC 383519 || | | ||||||| |||||| | |||| |||||| |||| ||| | ||||| Sbjct 396 TGTCTTCTTAACAGGTAAACCTGAAATCTCTTTTTTCAAAGTGGTCTATCGCCGCCACAC 455 Query 383520 TAACTTCTCTGTAGAATCTATTGAACAAACTTTCAATGGAAC 383561 |||||| | | || |||||| |||||||||| ||||| || Sbjct 456 TAACTTTGCCATGGAGTCTATTCAACAAACTTTGAATGGTAC 497 >seq195 Length=29407 Score = 114 bits (126), Expect = 5e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 391034 AATATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCT 391093 |||||| ||| | ||| | || || | ||||| | || ||||||||||| || || Sbjct 26981 AATATACTATCCATTCATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACT 27040 Query 391094 TGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGG 391153 || |||||||| || |||| || || | || ||||| || ||||||||||| Sbjct 27041 CGACGTTGAATCTTCAGATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGG 27100 Query 391154 AATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||| || || || |||||||| || ||||| |||| |||||| | ||||| || ||||| Sbjct 27101 AATGCCACCCGACCAACAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAAC 27160 Query 391214 TTTGGCGGATTATAATAT 391231 |||| ||||| ||||| Sbjct 27161 ATTGGGTGATTACAATAT 27178 Score = 84.2 bits (92), Expect = 9e-11 Identities = 147/212 (69%), Gaps = 13/212 (6%) Strand=Plus/Plus Query 407885 AAAAACCATTAAATTAGAATAT-GGAAATATAGTTCATAGACACTTACAGGATGGAGACC 407943 ||||| |||||| | ||||| ||| ||| || | ||||| | | |||||||| Sbjct 10571 AAAAA--ATTAAAATTAAATATAGGAGATACTGTAGAAAGACAAATTAAAGATGGAGATG 10628 Query 407944 CAATTTTATTCAATCGTCAACCTTCTTTACATAAACCTTCTATGATGGGTCATAAGGTAC 408003 | || | || ||| | ||||| || ||||| ||| || |||||||| ||||| ||| Sbjct 10629 TAGTTGTTTT-AATAGACAACCGTCGTTACACAAAATGTCCATGATGGGACATAAAGTAA 10687 Query 408004 AAGTAGCAAAAACAGATGGTATTAATACTTTTAGAATGAATGTATCTAGTACTGCTCCCT 408063 |||| | || | ||||| |||| | ||||| ||||| ||| |||| | Sbjct 10688 AAGTTGTCGAAGGA---------AATACGTTTAAATTGAATTTATCTGCGACTACTCCTT 10738 Query 408064 ATGGTGCTGATTTTGATGGGGATGAAATGAAT 408095 | ||| ||||||||||| |||||||||||| Sbjct 10739 ACAATGCAGATTTTGATGGCGATGAAATGAAT 10770 >seq3475 Length=17180 Score = 107 bits (118), Expect = 8e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 383413 AATATGGCTGGTGGCTTAATGCAACTCGTGGCTTATGGTGCTCAAGACGTATACCTAACA 383472 || |||| ||| || ||||||||||| || ||||||||||||||||| || | | ||||| Sbjct 1392 AACATGGGTGGAGGATTAATGCAACTTGTCGCTTATGGTGCTCAAGATGTCTTCTTAACA 1451 Query 383473 GGATCTCCTGAAGTAACTTTCTTCAAAAATATCTACCGCAGACACACTAACTTCTCTGTA 383532 || |||||| | |||| |||||| |||| ||| | ||||| ||||| | | Sbjct 1452 GGTAAGCCTGAAATCTCTTTTTTCAAAGTGGTCTATCGCCGCCACACCAACTTTGCCATG 1511 Query 383533 GAATCTATTGAACAAACTTTCAATGGAAC 383561 |||||||||||||| || |||| || || Sbjct 1512 GAATCTATTGAACAGACCATCAACGGTAC 1540 Score = 107 bits (118), Expect = 8e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 383413 AATATGGCTGGTGGCTTAATGCAACTCGTGGCTTATGGTGCTCAAGACGTATACCTAACA 383472 || |||| || || |||||||||||||| ||||||||||||||||| || | | ||||| Sbjct 2796 AACATGGGAGGAGGATTAATGCAACTCGTCGCTTATGGTGCTCAAGATGTCTTCTTAACA 2855 Query 383473 GGATCTCCTGAAGTAACTTTCTTCAAAAATATCTACCGCAGACACACTAACTTCTCTGTA 383532 || |||||| | |||| |||||| | |||| || | ||||| || || | | Sbjct 2856 GGTAAGCCTGAAATCTCTTTTTTCAAAGTTGTCTATCGTCGCCACACCAATTTTGCCATG 2915 Query 383533 GAATCTATTGAACAAACTTTCAATGGAAC 383561 || |||||| |||||||| ||||||| || Sbjct 2916 GAGTCTATTCAACAAACTCTCAATGGTAC 2944 >seq32895 Length=1541 Score = 102 bits (112), Expect = 3e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 383413 AATATGGCTGGTGGCTTAATGCAACTCGTGGCTTATGGTGCTCAAGACGTATACCTAACA 383472 || |||| || || |||||||||||||| ||||||||||||||||| || | | ||||| Sbjct 1532 AACATGGGAGGAGGATTAATGCAACTCGTCGCTTATGGTGCTCAAGATGTCTTCTTAACA 1473 Query 383473 GGATCTCCTGAAGTAACTTTCTTCAAAAATATCTACCGCAGACACACTAACTTCTCTGTA 383532 || |||||| | |||| |||||| |||| || | ||||| || || | | Sbjct 1472 GGTAAACCTGAAATCTCTTTTTTCAAAGTGGTCTATCGTCGCCACACCAATTTTGCCATG 1413 Query 383533 GAATCTATTGAACAAACTTTCAATGGAAC 383561 || |||||| |||||||||| ||||| || Sbjct 1412 GAGTCTATTCAACAAACTTTGAATGGTAC 1384 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || |||||||| || || || | || || || ||| Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || ||||||||||| || |||||||| || ||||| ||| Sbjct 640 GACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAA 699 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || |||||||| ||||| || | || |||| ||||| || Sbjct 700 CAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAAC 759 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | || || | || |||||| Sbjct 760 ATCCAAAAAGAATCTACTCTTCAC 783 >seq19263 Length=3464 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 391140 CAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTT 391199 || |||||||| || ||||| || || || || || || || || | || ||||||||| Sbjct 2844 CAGGATAAGGAGGGGATTCCCCCAGACCAGCAGCGATTGATCTTTGCCGGTAAACAACTT 2785 Query 391200 GAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259 || |||||| | || | || || ||||| ||| | ||||| |||| || ||||| ||| Sbjct 2784 GAGGATGGACGTACCCTTGCTGACTATAACATTCAAAAGGAGTCAACGCTGCACTTGGTA 2725 Query 391260 TTAAGACTGAGAGGATAAATACATT 391284 | | ||| |||| |||||| || Sbjct 2724 CTTCGGCTGCGAGGTAAAATACGTT 2700 >seq12979 Length=7205 Score = 86.0 bits (94), Expect = 2e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| | || ||||||||||| ||||| | | ||||||||||| | ||| ||| | Sbjct 4458 TTTGCAGCAGAGGAAATTTCATCCATGGTGTTGTCAAAAATGAAAGATATAGCGGAAGCA 4399 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || | || |||| |||||| || ||||| || || || ||||| || | Sbjct 4398 TATTTAGGGCAGACCGTCACTGGTGCAGTCATCACTGTGCCGGCGTACTTCAACGACTCT 4339 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| || || || || | | || || || || || Sbjct 4338 CAGCGCCAGGCCACGAAGGATGCCGGGTCCATCGCCGGGCTCACCGTGCTCCGCATCATC 4279 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || ||||| || || | |||||||| || Sbjct 4278 AACGAGCCGACAGCCGCAGCCATTGCATATGGCCT 4244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974699693044244