Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4024 149 5e-30 seq39397 105 5e-17 >seq4024 Length=17207 Score = 149 bits (164), Expect = 5e-30 Identities = 455/701 (65%), Gaps = 3/701 (0%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || || || || || || |||||||||||||| | ||| | || | |||||| | || Sbjct 6115 ACGAGGCGGTTGTCGAAGTCTTCACCTCCCAAGTGAGTGTCACCCGCAGTAGCTTTCACC 6174 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||||| || || || | || ||||||| || ||| || || || || | || Sbjct 6175 TCGAAAATGCCCTCCTCGATAGTTAAAAGAGAGACGTCAAAAGTGCCGCCGCCAAGGTCG 6234 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || | || || | || || ||||| || ||||| | ||| ||| Sbjct 6235 AAGATGAGGATGTTGCGCTCACCCCCAGCCTTCTTGTCAAGGCCGTACGCGATAGCCGCA 6294 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || ||||| || | ||| ||||| |||||||| |||| || ||| Sbjct 6295 GCCGTGGGCTCGTTAATGATACGCAAGCAGTTAAGTCCAGCAATGGAAGCTGCGTCCTTA 6354 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || |||| || || || || ||||| || |||||||| | || |||| | | ||| Sbjct 6355 GTCGCCTGTCGCTGGGAGTCATTGAAATACGCCGGAACAGTCACCACCGCATTATTGACT 6414 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 || || || | | || |||| | ||||| || || | ||| || |||| Sbjct 6415 TCCTTCCCGAGGAAGGCTTCTGCCACCTCCTTCATCTTCACTAGCACCATAGAGGAAACC 6474 Query 518375 TGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAA-ATATGGTTTATT 518433 | || | ||| || ||| ||| | |||| ||||| | ||| | ||| Sbjct 6475 TCCTCAGCAGAAAATATCTTTTTCTCACCCTTATATTCAACTTCGAGCATAGGCTTTTCG 6534 Query 518434 ACCAA--CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCA 518491 || || | || ||| ||||| || ||||| |||||| || Sbjct 6535 GCCTCTCCAGACTTCACGCCAAAAGGCCAAAGCTTGATATCACTTTGAACGGCAGAATCG 6594 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 || | | |||||| | || || ||||| || || |||||| | || || || ||| Sbjct 6595 GAGAACTTGCGACCAATGAGGCGCTTGGCATCGAAGATGGTATTGCTGGGGTTCATCGCA 6654 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 |||| | ||| |||||||| |||||||| | || || || || || | ||||| || Sbjct 6655 ACTTGGTTTTTCGCTGCATCGCCAATCAGGCGCTCGGTGTCAGTGAACGCCACATAAGAA 6714 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 || || ||||| || || |||||||| |||||||| || || |||||||||| ||| Sbjct 6715 GGCGTGGTGCGGTTGCCCTGATCATTTGCAATAATCTCCACACGGTCATTTTGCCACACA 6774 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 |||||||| | || || || | || ||||||||||| Sbjct 6775 CCTACACAGGAGTACGTGGTGCCGAGGTCGATACCAATAGC 6815 >seq39397 Length=5929 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 || || || || ||||| ||| | || | ||||| |||| |||||| || ||||||||| Sbjct 1082 TTTGCGGCGTCGCCAATGAGACGCTCGGAGTCTGTGAATGCAACATAGGAGGGAGTTGTG 1141 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || || || ||||| || ||||| || || || | |||||||||| |||||||| ||| Sbjct 1142 CGGTTTCCCTGATCGTTAGCAATGATCTCCACGCGATCATTTTGCCACACACCTACGCAA 1201 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | || ||||| | ||| ||||| |||||| Sbjct 1202 GAGTAGGTAGTTCCGAGATCGATACCGATAGCA 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778825409779558