Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3475 235 7e-57 seq19131 134 2e-26 seq30393 129 7e-25 seq188 122 1e-22 seq27800 104 3e-17 seq7861 100 4e-16 seq319 86.0 8e-12 >seq3475 Length=17180 Score = 235 bits (260), Expect = 7e-57 Identities = 500/732 (68%), Gaps = 24/732 (3%) Strand=Plus/Plus Query 80540 ATGTTTGGGATTATACATCTTATTATGAAGTCT-CCACAAGTCTGGACTTCCAACTCGGA 80598 |||||| | |||||| |||| | ||| | ||| ||| || | ||| |||||| || Sbjct 595 ATGTTTTGAATTATATTTCTTTTGATGCA-TCTGCCAAAACTTAGGATGGCCAACTTTGA 653 Query 80599 AGTTTTTGCGTATAGATGCCTTGTACCAAAACACACAATCTTGTATCCTGTTTGATTTTA 80658 | | || | |||||||||||| |||||||| || ||||| || || || ||||| Sbjct 654 AATCCTTTCTTATAGATGCCTTATACCAAAATACCACATCTTCGAT-CTTATTACTTTTA 712 Query 80659 CT-GTATTATCTAACACGAGACATTCATAGTTTTCTGTACAAGCGTCCATGACCTTGTTA 80717 || || |||||||| || ||||||||||| ||||||||||||||| |||||| | || Sbjct 713 CTCGTGTTATCTAAAACTAGACATTCATAATTTTCTGTACAAGCGGTCATGACTTGATTG 772 Query 80718 AACATGTCAAAGCTTGGAAAGATACCAAAAAAGGATTTATAGAGTTTCTCCCTATTTTGA 80777 |||||||| || |||||||||| || |||||| ||| | | || || | ||| ||| Sbjct 773 AACATGTCGAATGTTGGAAAGATTCCGAAAAAGTTTTTCCAAATCTTTTCACGATTCTGA 832 Query 80778 AGTATATTTTCCCTAAGAAGAAACACATAATCAACATTAGCTCTGAGAGCTGGTGGGAGA 80837 | |||||||| || || | || || ||||| | |||| ||| ||| | |||| ||| Sbjct 833 ACAATATTTTCTCTTAGGATGAAAACRTAATCTATATTACATCTAAGATCGGGTGAAAGA 892 Query 80838 TCCATACAATATTGCATAGTGAGCATGAAGAAGATCTTCCAGTGTCTTCCGTTCATGAAG 80897 ||||||||||||||||| | ||||| || | ||| ||| |||||||| || || || Sbjct 893 TCCATACAATATTGCATCGCCAGCATTAAACAAATCCCCCAATGTCTTCCATT-ATAAAA 951 Query 80898 CA-CTGCCTGATGCATGTATCCTTGAGGAACTTGTTATCATACATACAATCGTCAAGAAG 80956 | | || || | | || | || ||||| ||||||||||| ||||| || | ||| Sbjct 952 AATAAGTCTCATTGTTTTGTCTCTTAGTAACTTTTTATCATACATGCAATCATCTAAAAG 1011 Query 80957 CATGAAGGCTCCGCAATTTTG---TTTACCGTCAC---CCACCAACTTCCTCTGTCTCGC 81010 | || ||| ||||| ||| | || || | | | | | ||||| Sbjct 1012 TAAAAA-----TGCACTTTTGTTCTTTTCAGT-ACTTTTGATTACCGTTTTTTGTCTTTT 1065 Query 81011 CATGACTCTCTCTATCGCATCTCTATCGTAA--TCGCCATACACAAAGAGATCTGGAATA 81068 || | | | || | || | || || ||| || ||| ||||| | ||| || | | Sbjct 1066 GATCATTTTTTC-AACG-ACRTCAATTTTAAATTCATTATAGACAAATAAATCAGGCACA 1123 Query 81069 AATTCTGAATAGAAATGATTCCCCTCCTCTGTTCCTGAGAGAACTATACCAGCTGGAAGA 81128 || | | ||| ||| ||| || || || || || || | || | ||| | |||| | Sbjct 1124 AACTTTTGATAAAAACAATTACCTTCTTCCGTACCGGACATGACAACTCCAACGGGAATA 1183 Query 81129 TGTTTCTTATGGTACATAATATCCTTGACGAGGGTTGATTTACCTGTGTTTCGTTTACCT 81188 ||||| || | |||||| ||||| | | || ||||| ||||| |||| |||||| Sbjct 1184 TGTTTTTTGTAGTACATGATATCAGCAATCAATGTCGATTTGCCTGTATTTCTTTTACCA 1243 Query 81189 ATAAAAACACACACCCTGTCGTCCGATATCGTCTCAGGTTTGAATTTCCTCAATTGAAGA 81248 ||| ||| || |||| || || || ||| | ||||||| |||| |||| | Sbjct 1244 CAAAACACAAGAACTCTGTTATCATCAATAGTTCTAGGATCGAATTTCTTCAACTGAATA 1303 Query 81249 TTCAT--TCTAC 81258 ||||| ||||| Sbjct 1304 TTCATAATCTAC 1315 >seq19131 Length=3502 Score = 134 bits (148), Expect = 2e-26 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 166373 CTGAAATTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGT 166432 |||| |||| |||||||| || |||| ||| || ||||| ||| | | ||| || | Sbjct 336 CTGAGGTTGCCAAGCATAACACAGAAGCAGACTGCTGGGTTATTTTGCACAATAAAGTAT 277 Query 166433 ATGATCTCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTG 166492 |||| |||||||||| |||| || |||||||| ||||| ||||| || | || |||| Sbjct 276 ATGACGTCACAAAGTTCCTGCCWGACCATCCAGGAGGCAAAAAGGCCATTGTSCTATTTG 217 Query 166493 CTGGAAAGGATGCGACGGAAGAGTTTGATATGCTCCA 166529 |||| |||||||| |||||||| ||||||||||| || Sbjct 216 CTGGTAAGGATGCCACGGAAGAATTTGATATGCTGCA 180 >seq30393 Length=6106 Score = 129 bits (142), Expect = 7e-25 Identities = 491/755 (65%), Gaps = 26/755 (3%) Strand=Plus/Minus Query 101889 TTCATAA--AATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATA 101946 ||||||| |||| || |||||||||| || ||||||||||| |||||| ||| ||| Sbjct 1604 TTCATAAGCAATATAT--TGGCATTCTTCGCAGGGTCCGATGGGATTGTTAATGAAAATC 1547 Query 101947 TCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATC 102006 || | || ||| |||||| |||||| | ||||| | | || || |||| Sbjct 1546 TCGCCAGAAATTTTAGTGATGAAGTGCAAATTCCAGAAGCTCGTGCCTTTTACAGTTATC 1487 Query 102007 AATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTA 102066 || | || ||| | || | ||| ||||| | | ||||| || || | Sbjct 1486 AACAATACAACGAATCTATTCACAGTCAGATGTACAGCTTATTGATAGATCGATACATAA 1427 Query 102067 AGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCAT-GTATTCAA 102125 | || || | |||| || || ||| | || || || || | || | | ||||| Sbjct 1426 AAAATCACGCACAAAAGATTCATCTATTTAATGCGATTCACACCATCCCTTCGGTTTCAA 1367 Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG-CGTTCCTTTGCTGAGCG 102184 || ||||| | |||||| || ||| | ||| | | || ||||| || || || Sbjct 1366 AA-AAAGCATACTGGGCTCAAAAATGGATCAATAAAGATACGGCGTTC----GCAGAACG 1312 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 | | || ||||||||||| || ||||| | || |||||||||||||| || || | Sbjct 1311 TTTAATAGCGTTTGCGTGTGTGGAAGGTATTCTATTTTCTGGTTCCTTCTGTGCCATATT 1252 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 |||| | || || |||||||| ||||| ||||| | || || || ||| | || || | Sbjct 1251 TTGGTTGAAAAAACGAGGTCTGATGCCCGGTCTTTCTTTTTCYAATGAGTTGATATCAAG 1192 Query 102305 TGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAACC 102364 || || ||| | || |||||||| || || |||| || | ||| | || || Sbjct 1191 AGATGAAGGATTGCATCAAGAGTT--CGCTGTAACTCTT--TTTCATTACCTAAAAAGGA 1136 Query 102365 AA-CGACTGAGACTA---TTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGAT 102420 || | | || || | | ||| ||| || ||||| || ||| || || | || Sbjct 1135 AACCTTCAGAAACAATAGTCCATAATATCGTATCTGAAGCTGTCCAGAACGAAAAAGAAT 1076 Query 102421 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAAT 102480 | || || | | ||||| | || ||||||||| || ||||| |||| Sbjct 1075 TTATCACAGAATCAATCCCATGTCGGATGATTGGTATGAATCAAAAATTAATGTCGGAAT 1016 Query 102481 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGT-GCCTCCAA--TTTGGA 102537 | || || | || | ||| |||| || || || || ||| | || | |||| | Sbjct 1015 ACATCGAATTCGTTGCAGATCGATTATTAAAACA-ATTGGGATATTCTATTATCTTTGCA 957 Query 102538 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 102597 | | ||||||||||| || || ||||| || || ||| | || || ||||| ||||| | Sbjct 956 A--CAAAGAATCCATTCGATTTTATGGAAAATATCAGCTTGGATGGAAAGACTAACTTTT 899 Query 102598 TCGAAAAGAGGGTTGGGGACTATG-GCAAGATGGA 102631 | ||||| || || || || |||| | ||| |||| Sbjct 898 TTGAAAAAAGAGTCGGTGAATATGCGAAAGCTGGA 864 >seq188 Length=36365 Score = 122 bits (134), Expect = 1e-22 Identities = 209/303 (69%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 57078 CATCATATTTTTTATAAGTTCTGGGTTTTGCTTGAGAACATCATTCATATTGGGGAGAGC 57137 ||||||||| ||||| | || || ||||| || | ||||||||| || || | | Sbjct 6138 CATCATATTCTTTATGAAATCCGGATTTTGTTTAGCGATATCATTCATGTTTGGTATA-- 6081 Query 57138 GCTCTTAAACATACTGTTTGTCAAGTGGAACATCATCGCTGAACCACCCAACATCATGAT 57197 |||||||||||||| ||||||||||| ||||| | || ||| ||| | | | Sbjct 6080 -CTCTTAAACATACTATTTGTCAAGTGAAACATGAATGCACTTCCAGACAATGTTAATAA 6022 Query 57198 AAGCTTGACTTCTGGGGCGACGTTGACCTTGGATCTGTACTTGACATACAACTCTTCAAA 57257 | | || ||| ||||| | ||| || ||||||| ||| ||| |||||| Sbjct 6021 CAATTCGATTTCAGGGGCCATAGCAGTCTTTGACGAGTACTTGTCATGTAACCTTTCAAA 5962 Query 57258 GACTCCATCATAGTCATCTACATTCTCCATGACAGACTCCGACCAACCCTCAAGTTGGAT 57317 || |||||| ||||| | | ||||| ||| ||| ||||||||||| | || ||| Sbjct 5961 AACATTATCATAATCATCAATACCGTCCATCACATTCTCAGACCAACCCTCTAATTTGAT 5902 Query 57318 CTCAAAGGGGTTGTACCTCTTGTTGAGGAATTCTAGACCAGTCACACAAGCAACCAACAT 57377 ||||| || | |||||| || || | || || || || |||||| | || | |||||| Sbjct 5901 ATCAAATGGATCGTACCTTTTATTTAAAAACTCAAGTCCTGTCACAGATGCCATCAACAT 5842 Query 57378 ACG 57380 || Sbjct 5841 TCG 5839 >seq27800 Length=2063 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249 |||| || ||||| || ||||| ||||||||||| | ||||||||||| | |||| Sbjct 471 TCGCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGCGCTATCTTTTGGT 530 Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309 | |||||||| || || ||||| || ||| |||| ||||||||| ||| |||| |||| Sbjct 531 TGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCTCATCGCTCGCGACG 590 Query 102310 AGGGACTCCACCAAGAGTTTGC 102331 |||| | ||| ||| || || Sbjct 591 AGGGGATGCACAGAGACTTCGC 612 >seq7861 Length=6948 Score = 100 bits (110), Expect = 4e-16 Identities = 221/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| ||||| |||| || ||||||||||| || || ||| | || || || ||| Sbjct 4958 GTTCACACACGCGTCACCTACGCTCTTCAACGCCGGCACGCCACGCCCTCAGCTGAGCAG 4899 Query 111764 TTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || ||| | ||||||| || || || ||| | || || |||| ||| || | || Sbjct 4898 CTGCTTCTTGATTGCAATGAAAGACGACAGTATCGAAGGTATCTACGACACGCTGAAGGA 4839 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGC 111883 ||||| ||| |||||| | || || || ||||| | |||||||| | || | | Sbjct 4838 GTGTGCTGCAATTTCAAAGAGCGCCGGAGGGATCGGCCTCAACATCCATAACATCCGTTC 4779 Query 111884 CAACA--AGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 111941 | || ||| | ||| | || || || || || | || || | || |||||| Sbjct 4778 TACCAGTAGTTAC--ATTCGGGGCACCAACGGAACCTCGAACGGCATCGTCCCTATGCTT 4721 Query 111942 CGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATCT 111998 || || || |||| ||| || |||||||| | || | ||| | || ||||| || Sbjct 4720 CGTGTCTTCAACGACACTGCCCGCTATGTCGATCAGGGTGGTGGAAAGCGAAAGGGTGCT 4661 Query 111999 ATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| |||| ||||| || |||||||| Sbjct 4660 TTCGCCATCTACCTTGAACCTTGGCACGC 4632 >seq319 Length=35189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 102059 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATG 102118 || ||| ||||| ||||| ||| |||| ||||| ||||| |||||| |||| || Sbjct 33865 GTTTATCAAGGACAAAGCTGAAAAGCAGCACCTCTTCCGGGCCATACAAACAATTCCTTG 33806 Query 102119 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 102178 |||| ||||||||||| ||||| ||||||||| | | || | || | || || Sbjct 33805 CGTTCAGAAGAAAGCGGAGTGGGCCATGAAGTGGATCG--GCAGTG-ATAGTACTTTCGC 33749 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 |||||| || | | || || || || ||||| ||||| |||||||| | ||| || Sbjct 33748 TGAGCGTCTTCTAGGCTTCGCTTGCGTGGAGGGCATCTTTTTCTCTGGAAGGTACTGTGC 33689 Query 102239 TATTTA 102244 | |||| Sbjct 33688 TCTTTA 33683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620430143294960