Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq30393 140 4e-28 seq3475 140 4e-28 seq19131 127 2e-24 seq27800 93.3 5e-14 seq14094 84.2 3e-11 >seq30393 Length=6106 Score = 140 bits (154), Expect = 4e-28 Identities = 488/747 (65%), Gaps = 21/747 (3%) Strand=Plus/Plus Query 116979 TTTCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTT 117038 |||| |||| || || |||| || ||||| ||||| ||||| ||||| | ||| || || Sbjct 870 TTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATT 929 Query 117039 TTCCATAAAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCAC--CCCAACTTGTTT 117095 ||||||||| || ||||||||||| | || |||| | | | ||||| |||||| Sbjct 930 TTCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAA-TTGTTT 986 Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCT-TCTCAGAGTTCATACCGA 117154 | | ||||| | || | || ||||| || ||||| | | || |||||||| | Sbjct 987 TAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGA-TTCATACCAA 1045 Query 117155 TGAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 | | |||||||| || || ||| || |||| || ||| || || || | Sbjct 1046 TCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATA 1105 Query 117215 CGATGGCGTGGA---TAGTTTCGGTAGTGGGTC--TATTACGCAAAGTCTTGAAGAGCTC 117269 |||| |||| | ||||| | || | || | ||| | || | ||||| | Sbjct 1106 CGATATTATGGACTATTGTTTCTGAAG-GTTTCCTTTTTAGGTAATGAAA--AAGAGTTA 1162 Query 117270 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 117329 || || ||||| || || | || ||||||| || || | ||||| || || | || Sbjct 1163 CA--GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAG 1220 Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 117389 || ||||| ||||| || || ||||||||| | || || ||||| || || || || | Sbjct 1221 ACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAG 1280 Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC 117449 ||||| ||||||||||||||||| | | || || ||||| | || ||| | | Sbjct 1281 AATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACG-CCGTATCTT--TATT 1337 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | |||||| ||||| | || || || || | || | || || || || | Sbjct 1338 GATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATT 1397 Query 117510 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 117569 ||||| || |||||| | || || |||||| || |||||| || | Sbjct 1398 AAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACAT 1457 Query 117570 TTCGCCATGAACCATTTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 117629 | | |||| ||| || | |||||| ||| || | || ||||| || Sbjct 1458 CTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAAT 1517 Query 117630 CTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 ||||||||||| |||||| | || ||| ||| |||||| ||||||||||| || Sbjct 1518 TTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGC 1577 Query 117690 AAAGAATGCCAGGATGTACTTTATGAA 117716 |||||||||| || | ||||||| Sbjct 1578 GAAGAATGCCAATATATTGCTTATGAA 1604 >seq3475 Length=17180 Score = 140 bits (154), Expect = 4e-28 Identities = 474/729 (65%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 71865 TTTGGGATTGTACATCTTTTTATGGAGTTTCCAGAGGTTGGGACTTCCAACCCTAAACCC 71924 ||| | ||| || |||||| ||| | | ||| | || ||| ||||| | || | Sbjct 598 TTTTGAATTATATTTCTTTTGATGCATCTGCCAAAACTTAGGATGGCCAACTTTGAAATC 657 Query 71925 CTTTCTAACCGTGGCTTTGTACCAGAATAC-ACAGTCAGTGATCTTATTAGATTTTACA- 71982 |||||| | | || || ||||| ||||| ||| || |||||||||| |||||| Sbjct 658 CTTTCTTATAGATGCCTTATACCAAAATACCACA-TCTTCGATCTTATTAC-TTTTACTC 715 Query 71983 GTATTGTCTAATACGAGGCACTCGTAGTTTTCTGTACACGCATCCATCACTT--TTGAAA 72040 || || ||||| || || || || || ||||||||||| || ||| |||| ||| | Sbjct 716 GTGTTATCTAAAACTAGACATTCATAATTTTCTGTACAAGCGGTCATGACTTGATTG--A 773 Query 72041 ACATGTCATATGAGGGGAAGATCCCAAAAAATGATTTGTACAATTTCTCTCTATTCTGAA 72100 ||||||| ||| || ||||| || ||||| ||| | | || || | |||||||| Sbjct 774 ACATGTCGAATGTTGGAAAGATTCCGAAAAAGTTTTTCCAAATCTTTTCACGATTCTGAA 833 Query 72101 TGATATTTTCCCTAAGTATAAATACATAATCTACATTTGCCCTAAGTGCTGGTGGCAGAT 72160 |||||||| || || || || || ||||||| ||| ||||| | |||| |||| Sbjct 834 CAATATTTTCTCTTAGGATGAAAACRTAATCTATATTACATCTAAGATCGGGTGAAAGAT 893 Query 72161 CCATGACATACTGCATTGTCAACATGAAGAAGATATTATAGTGCCTACCATTCATGAAAC 72220 |||| ||| ||||| | || ||| || | || | || || ||||| || ||| Sbjct 894 CCATACAATATTGCATCGCCAGCATTAAACAAATCCCCCAATGTCTTCCATT-ATAAAAA 952 Query 72221 A-CTGGCGAATACAAGTATCCTTCAGGAACTTACTATCATACATACAATCATCAAGGAGC 72279 | | | || | || | || ||||| |||||||||| |||||||| | || Sbjct 953 ATAAGTCTCATTGTTTTGTCTCTTAGTAACTTTTTATCATACATGCAATCATCTAAAAGT 1012 Query 72280 ATGAAAGCACCATTATATGGATTCTTCCCATTTGTGCCAATTATCTTTCTCTGCCTGGAT 72339 | || |||| || ||||| || | | |||| | || | || || Sbjct 1013 AAAAATGCACTTTT------GTTCTTTTCAGTACTTTTGATTACCGTTTTTTGTCTTTTG 1066 Query 72340 ATAACCCGCTCTATTGCATCTCTGTCGTATTCACCGTAGACAAAGAGGTCTGGAATAAAC 72399 || | || | | || | | ||||| |||||||| | || || | |||| Sbjct 1067 ATCATTTTTTCAACGACRTCAATTTTAAATTCATTATAGACAAATAAATCAGGCACAAAC 1126 Query 72400 TCACCGTAAAAGTGATTCCCCTCCTCCGTACCCGATAGTACAATCCCTGCTGGTATATGT 72459 | ||||| ||| || || |||||||| || | |||| || | || |||||| Sbjct 1127 TTTTGATAAAAACAATTACCTTCTTCCGTACCGGACATGACAACTCCAACGGGAATATGT 1186 Query 72460 TTCTTGTGATACATAATATCCTTTACTAAGGTTGACTTCCCTGTGTTACGCTTTCCGATA 72519 || |||| ||||| ||||| | || || || || ||||| || | || || | Sbjct 1187 TTTTTGTAGTACATGATATCAGCAATCAATGTCGATTTGCCTGTATTTCTTTTACCACAA 1246 Query 72520 AACACACAGACTCTGTCATCCGACATAGTCTCGGGTTTGAATTTCCTCAATTGAAGATTC 72579 |||||| ||||||| ||| ||||| || | ||||||| |||| |||| |||| Sbjct 1247 AACACAAGAACTCTGTTATCATCAATAGTTCTAGGATCGAATTTCTTCAACTGAATATTC 1306 Query 72580 AT--TCTAC 72586 || ||||| Sbjct 1307 ATAATCTAC 1315 >seq19131 Length=3502 Score = 127 bits (140), Expect = 2e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 158580 CTGAAATTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGT 158639 |||| |||| |||||||| || |||| ||| || ||||| ||| | | ||| || | Sbjct 336 CTGAGGTTGCCAAGCATAACACAGAAGCAGACTGCTGGGTTATTTTGCACAATAAAGTAT 277 Query 158640 ATGATCTCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATACTTTTCG 158699 |||| |||||||||| |||| || |||||||| ||||| ||||| || | || || | Sbjct 276 ATGACGTCACAAAGTTCCTGCCWGACCATCCAGGAGGCAAAAAGGCCATTGTSCTATTTG 217 Query 158700 CTGGAAAGGATGCGACGGAAGAGTTTGATATGCTCCA 158736 |||| |||||||| |||||||| ||||||||||| || Sbjct 216 CTGGTAAGGATGCCACGGAAGAATTTGATATGCTGCA 180 >seq27800 Length=2063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || || | || || || || |||| || || ||||| || || |||||| Sbjct 594 CCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCCGGCATCAGTCCGCGCTTC 535 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||||||||| | ||||||||||| | ||||||||||||| |||||||| ||||| || Sbjct 534 TTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATGCCCTCCACGCACGCGAAA 475 Query 117412 GCAAAAAGGCG 117422 || | ||| || Sbjct 474 GCGAGAAGACG 464 >seq14094 Length=11654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||||||||||||||| |||||||||||||| || |||||| || || Sbjct 1879 GCAAAGTCGCAGTGGAGACCCTCATCACGGGAAATAAGTTCGTTAGAGAAGGTGAGCCCG 1820 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG 117367 ||||| | || || ||||||| ||| ||||||| Sbjct 1819 GGCATCAATCCACGTTTCTTCAGCCAGTAAATAG 1786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589684017533320