Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8895 161 2e-34 seq12187 131 4e-25 seq195 125 2e-23 seq12650 113 1e-19 seq13311 100 6e-16 seq18016 91.5 3e-13 seq17433 87.8 4e-12 >seq8895 Length=8815 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || |||||||| || |||||||| || || || | ||| ||||| Sbjct 788 ACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCC 729 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || | || ||||||||| || || || ||||||||||||||| Sbjct 728 AGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCTTGA 669 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| ||||| ||||| ||||| || || || | ||| | ||||| Sbjct 668 ATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTTA 609 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 608 CCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq12187 Length=9842 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || |||||||| || || ||||| | ||| || || ||||| Sbjct 9643 GTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCCAGCTG 9702 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | || || ||||| ||||| ||||| || || || ||||| || Sbjct 9703 CTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTT 9762 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| ||||| || || ||||| || || || | ||||| || || Sbjct 9763 GGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGATGGTCTTCCCGGT 9822 Query 195117 CAAAGTTTTTACGAA 195131 | ||||||||||| Sbjct 9823 GAGGGTTTTTACGAA 9837 >seq195 Length=29407 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || | || || |||||||| ||||||||||| | | |||||||| || Sbjct 27209 CAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTC 27150 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || ||||| || || | |||||||||||| || || || ||||| || || Sbjct 27149 TTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATC 27090 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || ||||| ||| ||||| || || || || ||| ||| || || || || | || Sbjct 27089 CTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGT 27030 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTA 195149 || ||||| |||||||| | || | |||||| |||| || Sbjct 27029 TTTACCTGTTAAAGTTTTGATAAATATTTGCATGAATGGATA 26988 >seq12650 Length=5101 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 |||||| || ||||| ||||| || |||||||||||||| || ||||| || |||||||| Sbjct 753 CTGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAAT 694 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| ||| ||||| || || || || || || ||||||||||||| || || || Sbjct 693 TTTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCC 634 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||| || || | ||||| Sbjct 633 TGTGAGAGTTTTCACAAAAATCTGCAT 607 >seq13311 Length=4779 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| || || || || | || || |||||||| Sbjct 4642 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTG 4701 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || || ||||| || ||||| || || ||||| ||||| || Sbjct 4702 CTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTT 4761 Query 195057 TTGCTTGACGTTCTCAAT 195074 ||| ||||| ||||| Sbjct 4762 GGCCTTCACGTTGTCAAT 4779 >seq18016 Length=3756 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| ||||| |||||||| || || ||||| | || || |||||||| Sbjct 114 GTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCGAGAGTGCGACCGTCCTCGAGCTG 173 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| || |||||||| || || || ||||| || ||||| ||| Sbjct 174 CTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCT 216 >seq17433 Length=6093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||| |||||||| | || || || ||||| Sbjct 2922 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCGTCCTCAAGCTG 2863 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||| ||||| || || || || || || ||||| || ||| Sbjct 2862 CTTACCAGCGAAAATCAGGCGCTGCTGATCAGGAGGGATTCCT 2820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108909536378381