Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq195 116 5e-21 >seq195 Length=29407 Score = 116 bits (128), Expect = 5e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 126940 GTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAA 126999 |||| || |||||||| || |||||||| || ||||| ||||||||||| | ||||||| Sbjct 3996 GTAATATCTTTATAGGACCTACATACTACCAACGTCTGAAACATATGGTGGATGATAAAA 4055 Query 127000 TGCATGCTAGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTT 127059 | ||| || ||| | | || | | || ||| ||| ||||| | || || Sbjct 4056 TCCATTCTCGAAATAAAGGCCCTTTGCAAATTTTAACTCGACAACCTGTCGAAGGACGCA 4115 Query 127060 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAG 127119 | | | |||||| ||| | |||||||||||||| |||||| | | ||||||| Sbjct 4116 CACGCGATGGTGGTTTACGCTTTGGAGAAATGGAGCGCGATTGTGTCATATCACATGGAG 4175 Query 127120 CCACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGT 127179 | |||| |||||||| ||| | |||||||| |||||| | | | | || | || | Sbjct 4176 CTTCACATTTTTTAAAAGAACGTTTGTTTTTACATTCAGACGCATATAGAGTTCACGTTT 4235 Query 127180 GTACAAATTGTGGAATGAT 127198 || ||| |||||||| || Sbjct 4236 GTTCAATCTGTGGAATTAT 4254 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 182829 AAAAAATTAAACTTGA-TATCGGAGATATAATCAAAAGACAACTGCGAAATGGAGATTGG 182887 ||||||||||| || | ||| ||||||| | |||||||| | | |||||||| Sbjct 10571 AAAAAATTAAAATTAAATATAGGAGATACTGTAGAAAGACAAATTAAAGATGGAGATGTA 10630 Query 182888 GTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGCAAGCATTTATAGTAGTT 182947 ||| | |||| | | ||||| | ||||| ||| || ||| | | || |||| Sbjct 10631 GTTGTTTTAA-TAGACAACCGTCGTTACACAAAATGTCCATGATGGGACATAAAGTAAAA 10689 Query 182948 ATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGGCTAAAGCTTACAATGCAGAT 183007 || | || || || || || | |||||||| | | ||| |||||||||||||| Sbjct 10690 GTTGTCGAAGGAAATACGTTTAAATTGAATTTATCTGCGACTACTCCTTACAATGCAGAT 10749 Query 183008 TTTGATGGAGATGAAATGAATTTACATGTTCC 183039 |||||||| |||||||||||| | ||| |||| Sbjct 10750 TTTGATGGCGATGAAATGAATATGCATATTCC 10781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658071998500280