Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq30393 168 8e-37 >seq30393 Length=6106 Score = 168 bits (186), Expect = 8e-37 Identities = 627/962 (65%), Gaps = 60/962 (6%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||| |||||| | |||||||||||||| || ||||| ||||| || Sbjct 858 CATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATC 917 Query 18717 TAA--TGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT 18774 || |||||| |||||||||||| |||||||| ||| || | | | | |||| Sbjct 918 CAAGCTGATATT--TTCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAAT 973 Query 18775 --CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832 || |||| | || || || ||| || || |||| || ||| ||| | | Sbjct 974 ATCCCAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTT 1033 Query 18833 AATTCATTCCTATTAATTTAACA-GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 |||||| || || | | ||| || | || ||||| | |||||||| ||| | | Sbjct 1034 GATTCATACCAATCA-TCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGG 1092 Query 18892 ACTGCCTCTGATATAATAG-AT--ACAACTCTATCT-------TCATTAGGAGGGTAT-- 18939 || || || |||| ||| || || | | | ||| || || ||| || Sbjct 1093 ACAGCTTCAGATACGATATTATGGACTATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGA 1152 Query 18940 AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATC 18999 | |||| ||| ||| || || || ||| | ||| || ||||| |||| Sbjct 1153 AAAAGA-GTT----------ACA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATC 1200 Query 19000 AATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAA 19059 || ||||| ||||| | | ||| |||||||| |||| |||||| ||||| ||||| | | Sbjct 1201 AACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCA 1260 Query 19060 GCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCA 19119 || || |||||||| | |||||||| || ||||| || | || | |||| | Sbjct 1261 CAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCG 1320 Query 19120 TAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 | | ||| ||||| |||||||| | ||||| | || || ||| || | Sbjct 1321 AACGCCGTATCTTTATTG---ATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAA 1377 Query 19180 GGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT-ATCTTTAACATATGC 19238 || || || | || | ||||||||||| || | | | || || ||| | ||| Sbjct 1378 GGGATGGTGTGAATCGCATTAAATAGATGAAT-CTTTTGTGCGTGATTTTTTATGTATCG 1436 Query 19239 ATCTATCAATAAACTGTACATTT--CTGAATGAATATTTTC----TATAGCCATCTGAAA 19292 |||||||||||| |||||||| | ||| |||||| ||| ||| | ||| | Sbjct 1437 ATCTATCAATAAGCTGTACATCTGACTG--TGAATAGATTCGTTGTATTGT----TGATA 1490 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 | |||||| | ||||||| || || |||||| || ||| || | | | ||| Sbjct 1491 ACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATT 1550 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 ||||||||| || ||||| |||| || ||||| |||| || | || ||| || Sbjct 1551 TTCATTAACAATCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTG 1610 Query 19413 TTCATCTGAG--GT-TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469 |||| ||| || || | | ||||||| || || || || |||||||| Sbjct 1611 TTCA---GAGTCGTCCAACGATTCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGT 1667 Query 19470 AACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTAT 19529 ||| ||||| ||| || || |||| | ||| | | ||| ||| ||||||| || Sbjct 1668 AACCGTCCAGAAACTCGCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAAT 1727 Query 19530 AGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC--CAT-TTTTTGAAA 19586 ||| |||| ||| ||| |||| |||||| | || |||||||| || ||||||| | Sbjct 1728 AGGGAATAATACATATCGATTTGGATTTTCAATTAGGATAGGTTCTTGATATTTTTGATA 1787 Query 19587 AA 19588 || Sbjct 1788 AA 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561826038194520