Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8895 109 4e-18 seq18 107 2e-17 seq195 96.9 3e-14 seq11650 91.5 1e-12 seq11413 91.5 1e-12 >seq8895 Length=8815 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| ||| |||||| || ||||||||||| || || | Sbjct 797 AGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGC 738 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| |||||||| || || || || | |||||| || ||||| || ||||||||| Sbjct 737 CCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCT 678 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || ||||||||||| || || ||||| || |||| | ||| | | || || Sbjct 677 TTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAG-GT 619 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||||||||| ||||| || || || ||||| Sbjct 618 GATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq18 Length=50513 Score = 107 bits (118), Expect = 2e-17 Identities = 159/216 (74%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 433500 CCATTTATTTTTGGATTTACGGTATATGATAGTTTTATGAA--TGAAACTGTCGCAAAAA 433557 || || || ||||||||| | || ||||| |||||| ||| || | ||| || | || Sbjct 39910 CCGTTCATATTTGGATTTTCAGTTTATGAAAGTTTT--GAAGGTGCCAATGTTGCGAGAA 39967 Query 433558 CAGGTGT--TGTTGATTGTCCAAATGATAAAGAAAATATTATT-GGTGGACATGCTG-TA 433613 ||||| | || ||| |||| || |||||| |||| | ||||||||||| | || Sbjct 39968 CAGGTATCATGCCGATG--CCAAGTGTATCAGAAAA-ATTACTAGGTGGACATGCAGTTA 40024 Query 433614 TGTGCTGTTGGATATGATGATATTAAAAAAGTATTTATTATAAAAAATTCATGGGGTTCC 433673 || || || |||||| ||||| | | ||| |||||||| ||||||||||||| Sbjct 40025 TG-GCCGTAGGATATAATGATGATTTGAGAGTCTTTATTATTCGAAATTCATGGGGTGAG 40083 Query 433674 AAATGGGGTCTCAATGGATATTTTTACATGCCATAT 433709 || |||||| || ||||||||||||||||||||| Sbjct 40084 AATTGGGGTGATAAGGGATATTTTTACATGCCATAT 40119 >seq195 Length=29407 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || ||||| | ||| |||||| |||||||||||| | | ||||| ||||| Sbjct 27205 ACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCC 27146 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | ||||||||| |||||||| | || ||| || || || || |||||||| ||||| || Sbjct 27145 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGG 27086 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTT 563444 ||||| ||||| || || ||||| | || | | ||||| || | |||||| Sbjct 27085 ATTTTAGACTTTACGTTATCTATCGTATCTG-AAGATTCAACGTCGAGTGTTATAGTTTT 27027 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | |||||| | || |||||||| Sbjct 27026 ACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq11650 Length=7723 Score = 91.5 bits (100), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| |||| || ||||||||| |||||||| || || || || ||||| ||||| ||| Sbjct 3787 TTTGATTTGGAGAATATTCCTCCGGCTCCTCGCGGTGTGCCTCAGATTGAGGTTACCTTC 3728 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||||||||| ||| | || |||| ||| Sbjct 3727 GATATCGATGCCAATGGCATTGTTAACGTGAGTGC 3693 >seq11413 Length=16570 Score = 91.5 bits (100), Expect = 1e-12 Identities = 170/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 896587 CCTCATTTAGGAAATTTAATTGGA-GCTTTATTGAGTGGTGATGTTTATGCTCGATTTAA 896645 ||||| | ||||| |||| ||| || || ||||||| || ||||| ||||||| | Sbjct 1242 CCTCACCTGGGAAACATAATAGGATGCGTT-TTGAGTGCCGACGTTTACGCTCGATATTG 1300 Query 896646 GCGTGAACAACATCATGAAGTAATTTATCTATCTGGCACTGATGAATATGGCACAACAAC 896705 || | || | | || |||||| | | ||||||||||||||||| || | || Sbjct 1301 CCGAAGCCGCGATTACAACGTGATTTATGTGTGCGGCACTGATGAATATGGAACCGCGAC 1360 Query 896706 AATGATTAAAGCTCGACAAGAGGGAGTTACATGCCGCG--AATTATGTGATAAATATTTT 896763 || |||||| | ||||||| ||| | |||||| || | ||||| |||||| | Sbjct 1361 GGAGACTAAAGCGAGCCAAGAGG--GTTTGACGCCGCGACAAATCTGTGACAAATATCAT 1418 Query 896764 GAATTACACAAAAAAGTATATGATTGGTTTAATATTCAGTTTGATATATTCGGTCGAACA 896823 | | ||||| || | ||||| |||||| ||||||||||| |||||||| || Sbjct 1419 AAGATTCACAAGGAAATCTATGACTGGTTTGGCTGTCAGTTTGATAGCTTCGGTCGCACG 1478 Query 896824 TCAAC 896828 || || Sbjct 1479 TCTAC 1483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027167768664070