Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq30393 149 7e-31 >seq30393 Length=6106 Score = 149 bits (164), Expect = 7e-31 Identities = 575/897 (64%), Gaps = 11/897 (1%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| ||| |||||| || |||| | |||| ||||| || |||||||| || Sbjct 858 CATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATC 917 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | ||||||||||||||||| |||||||| ||| | | ||| || | || Sbjct 918 CAAGCTGATATTTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCC 977 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 |||| || | | | ||| ||||| ||||| ||||||| |||||| || | || Sbjct 978 CAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATT 1037 Query 37052 TATACCAATTAGTTTTAC-TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 |||||||| | | || ||| |||| ||| | |||| |||||| | |||| Sbjct 1038 CATACCAATCA-TCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAG 1096 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | || || |||||| | | | ||| | || ||||| || | ||| | Sbjct 1097 CTTCAGATACGATATTATGGACTATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGAAAAA 1156 Query 37171 -ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 | ||| || || || ||| || ||||||||||| |||||| ||||| ||||| Sbjct 1157 GAGTTACA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAA 1215 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 | | || ||||| | ||||| |||||| | ||||||||| || || || |||||| Sbjct 1216 GAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAA 1275 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349 || | ||||||||| || ||||| |||| | |||| |||| | | ||| Sbjct 1276 AATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACGCCG---TATCT 1332 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 | | |||||||||| | ||| | ||| ||| | ||| | || || | ||| Sbjct 1333 TTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATC 1392 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || || ||| | |||| | | || | |||| || ||| || | ||| || Sbjct 1393 GCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTG 1452 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||| | | ||||||| ||| | | ||| ||| ||||| | |||||| Sbjct 1453 TACATCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCT 1512 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | ||| || || | | ||| | | || | ||||||||||| |||||||| Sbjct 1513 GGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCCATCGGAC 1572 Query 37590 GCTGCAAAGAAAGCAAGAACATATT--TTATAAAATGTCTTTCATCATTTGATAATTTTT 37647 |||| ||||| || || ||||| |||| ||| | |||| | || || Sbjct 1573 CCTGCGAAGAATGC--CAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGATT 1630 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATG 37707 ||||||| || ||||| || || ||||| ||| ||||| ||||| || | | Sbjct 1631 CCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAG 1690 Query 37708 CACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 | || | ||| || | | ||| || ||| || || |||| |||| ||| || Sbjct 1691 CCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATAATACATATCGAT 1747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592018842437720