Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq195 172 4e-38
seq8895 127 2e-24
seq12650 84.2 2e-11
>seq195
Length=29407
Score = 172 bits (190), Expect = 4e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|||||||||||||| || || | ||| | ||| ||||||||||||||||||||||| |
Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| ||||| || ||||| ||||| | |||| || || || | ||| ||
Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || || | ||||| || ||||||||||| | |||||| ||||||
Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCATG 26996
>seq8895
Length=8815
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | || ||| | || | ||||| |||||||||||||| || |||||||| ||
Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || |||| ||| || || || |||||||| | ||||| || || ||
Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| ||||||||||| || || | || | ||||||||| | || ||
Sbjct 686 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACC 627
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| | |||| || || || || | ||||| ||||| |||||||||||
Sbjct 626 TCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATGGT 577
>seq12650
Length=5101
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
||||| || || || || | |||||||| || || || || ||||| ||||||||||||
Sbjct 752 TGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATT 693
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
|| || || | || | ||| ||| | || |||||||| || | ||||| ||
Sbjct 692 TTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCCT 633
Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||| ||||||||
Sbjct 632 GTGAGAGTTTTCACAAAAATCTGCAT 607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396084040676751
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |