Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq12650 109 4e-18 seq11650 93.3 3e-13 >seq12650 Length=5101 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||||||||| |||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 752 TGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATT 693 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || || || ||||||||| || | | | |||||||||||| ||||| || Sbjct 692 TTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGA-CTTCAAGGGTAATTGTTTTCCC 634 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || ||||| || Sbjct 633 TGTGAGAGTTTTCACAAAAATCTG 610 >seq11650 Length=7723 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 ||||| ||| || ||| || | || || |||| ||||| |||||||| || || || Sbjct 5682 TATCTCGGAAGAGGAGTGACCCAGGCCGTTGTTACCGTTCCGGCATATTTCAACGACTCA 5623 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || || ||||| || ||||||||||| | |||||| ||||| | || | || ||||| Sbjct 5622 CAGCGCCAAGCTACAAAAGATGCGGGTAAAATTGCGGGTCTGGACGTGCTCCGGATTATC 5563 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || ||||| | || ||| | ||||| || Sbjct 5562 AACGAGCCTACTGCGGCTGCACTGTCATACGGTGTGGATAAAAA 5519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266452982470964