Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3475 149 7e-31 seq30393 140 4e-28 seq19131 127 2e-24 seq7861 105 8e-18 seq27800 93.3 5e-14 seq14094 84.2 3e-11 seq4982 82.4 9e-11 >seq3475 Length=17180 Score = 149 bits (164), Expect = 7e-31 Identities = 476/729 (65%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 110654 GTAGA--ATGAATCTTCAATTGAGGAAATTCAAACCCGAGACTATGTCGGATGACAGAGT 110711 ||||| |||||| |||| |||| ||||||| | || ||||| ||| ||||||| Sbjct 1315 GTAGATTATGAATATTCAGTTGAAGAAATTCGATCCTAGAACTATTGATGATAACAGAGT 1256 Query 110712 CTGTGTGTTTATCGGAAAGCGTAACACAGGGAAGTCAACCTTAGTAAAGGATATTATGTA 110771 ||||||| || || | || ||||| || || || || | ||||| ||||| Sbjct 1255 TCTTGTGTTTTGTGGTAAAAGAAATACAGGCAAATCGACATTGATTGCTGATATCATGTA 1196 Query 110772 TCACAAGAAACATATACCAGCAGGGATTGTACTATCGGGTACGGAGGAGGGGAATCACTT 110831 |||| |||||||| || | || |||| | || |||||||| || || ||| || Sbjct 1195 CTACAAAAAACATATTCCCGTTGGAGTTGTCATGTCCGGTACGGAAGAAGGTAATTGTTT 1136 Query 110832 TTACGGTGAGTTTATTCCAGACCTCTTTGTCTACGGTGAATACGACAGAGATGCAATAGA 110891 ||| ||||| | || || | |||||||| ||||| | | || | | || Sbjct 1135 TTATCAAAAGTTTGTGCCTGATTTATTTGTCTATAATGAATTTAAAATTGAYGTCGTTGA 1076 Query 110892 GCGGGTTATATCCAGGCAGAGAAAGATAATTGGCACAAATGGGAAGAATCCATATAATGG 110951 | || || || | || | |||| | | || ||||| || | Sbjct 1075 AAAAATGATCAAAAGACAAAAAACGGTAATCAAAAGTACTGAAAAGAAC------AAAAG 1022 Query 110952 TGCTTTCATGCTCCTTGATGATTGTATGTATGATAGTAAGTTCCTGAAGGATACTTGTAT 111011 ||| || | || | |||||||| |||||||||| ||||| || | || | || Sbjct 1021 TGCATTTTTACTTTTAGATGATTGCATGTATGATAAAAAGTTACTAAGAGACAAAACAAT 962 Query 111012 TCGCCAG-TGTTTCATGAATGGTAGACACTATAATATCTTCTTCATGTTGACAATGCAGT 111070 | | | ||| || ||||| ||||| | || | || ||| || | ||||| | Sbjct 961 GAGACTTATTTTTTAT-AATGGAAGACATTGGGGGATTTGTTTAATGCTGGCGATGCAAT 903 Query 111071 ATGTCATGGATCTGCCACCAGCACTTAGGGCAAATGTAGATTATGTATTTATACTTAGGG 111130 || |||||||| |||| | ||||| ||| ||||||| || || || || || | Sbjct 902 ATTGTATGGATCTTTCACCCGATCTTAGATGTAATATAGATTAYGTTTTCATCCTAAGAG 843 Query 111131 AAAATATCATTCAGAATAGAGAGAAATTGTACAAATCATTTTTTGGGATCTTCCCCTCAT 111190 ||||||| |||||||| | || || | | ||| ||||| || ||||| || ||| Sbjct 842 AAAATATTGTTCAGAATCGTGAAAAGATTTGGAAAAACTTTTTCGGAATCTTTCCAACAT 783 Query 111191 TTGACATGTTTTCAA--AAGTGATGGATGCGTGTACAGAAAACTACGAGTGCCTCGTATT 111248 | |||||||| ||| |||| ||| || ||||||||||| || || || || || || Sbjct 782 TCGACATGTT--CAATCAAGTCATGACCGCTTGTACAGAAAATTATGAATGTCTAGTTTT 725 Query 111249 AGACAATAC-TGTAAAATCTAATAAGATCACCGACTGT-GTATTCTGGTACAAAGCCACA 111306 ||| || || |||||| |||||||||| || ||| ||||| ||||| || || | Sbjct 724 AGATAACACGAGTAAAA-GTAATAAGATCGAAGA-TGTGGTATTTTGGTATAAGGCATCT 667 Query 111307 GTTAGAAAGGGGTTTAGGGTTGGAAGTCCCAACCTCTGGAAACTCCATAAAAAGATGTAC 111366 | ||||||| || | ||||| ||| || | ||| | | ||| |||||| || Sbjct 666 ATAAGAAAGGATTTCAAAGTTGGCCATCCTAAGTTTTGGCAGATGCATCAAAAGAAATAT 607 Query 111367 AATCCCAAA 111375 ||| | ||| Sbjct 606 AATTCAAAA 598 >seq30393 Length=6106 Score = 140 bits (154), Expect = 4e-28 Identities = 488/747 (65%), Gaps = 21/747 (3%) Strand=Plus/Minus Query 64786 TTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATC 64845 ||||||| | || |||||||||| || ||||||||||| |||||| ||| ||| || Sbjct 1604 TTCATAAGCAATATATTGGCATTCTTCGCAGGGTCCGATGGGATTGTTAATGAAAATCTC 1545 Query 64846 AATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCAA 64905 | |||||| ||||||||||| || ||||| || | || ||| |||||| Sbjct 1544 GCCAGAAATTTTAGTGATGAAGTGCAAATTCCAGAAGCTCGTGCCTTTTACAGTTATCAA 1485 Query 64906 TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAG 64965 | || ||| |||| | | | || |||||| || |||||| || Sbjct 1484 CAATACAACGAATCTATTCACAGTCAGATGTACAGCTTATTGATAGATCGATACATAAAA 1425 Query 64966 GATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAG 65025 || | |||||| || ||||| | || || || || | || | || || Sbjct 1424 AATCACGCACAAAAGATTCATCTATTTAATGCGATTCACACCATCCCTTCGGTTTCAAAA 1365 Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTT 65085 || || | ||||| |||||| | | | ||| || | ||||| || || | Sbjct 1364 AAAGCATACTGGGCTCAAAAATGGATCAATA--AAGATACGG-CGTTCGCAGAACGTTTA 1308 Query 65086 TTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGG 65145 | ||||||||||||||||| ||||| | || || || || ||||| || || | |||| Sbjct 1307 ATAGCGTTTGCGTGTGTGGAAGGTATTCTATTTTCTGGTTCCTTCTGTGCCATATTTTGG 1248 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 ||||| || || ||||| ||||| || || | || || ||||| | || || ||||| Sbjct 1247 TTGAAAAAACGAGGTCTGATGCCCGGTCTTTCTTTTTCYAATGAGTTGATATCAAGAGAT 1188 Query 65206 GAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATA--GACCCA 65263 || || | || || ||||| || || | ||||| | || | ||| | || | Sbjct 1187 GAAGGATTGCATCAAGAGTTCGC--TGTAACTCTT--TTTCATTACCTAAAAAGGAAAC- 1133 Query 65264 CTACCGAAACTA---TCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCA 65320 || | ||||| | |||| ||||| || || || ||| || |||| || | Sbjct 1132 CTTCAGAAACAATAGTCCATAATATCGTATCTGAAGCTGTCCAGAACGAAAAAGAATTTA 1073 Query 65321 TCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA-AGATGTCCGAGTAC 65379 || || || |||||||| | || |||||||| || | | ||||| || ||| Sbjct 1072 TCACAGAATCAATCCCATGTCGGATGATTGGTATGAA-TCAAAAATTAATGTCGGAATAC 1014 Query 65380 ATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG--GTGCCA-CCCATTTGGAAC 65436 || || | || | ||||| | | |||||| ||||| | | | |||| || Sbjct 1013 ATCGAATTCGTTGCAGATCGATTATTAAAACAA-TTGGGATATTCTATTATCTTTGCAA- 956 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 | ||||||||||| || ||||||||||| || ||| | ||||| ||||| ||||| ||| Sbjct 955 -CAAAGAATCCATTCGATTTTATGGAAAATATCAGCTTGGATGGAAAGACTAACTTTTTT 897 Query 65497 GAGAAGCGAGTTGGGGACTATGGGAAA 65523 || || |||| || || |||| |||| Sbjct 896 GAAAAAAGAGTCGGTGAATATGCGAAA 870 >seq19131 Length=3502 Score = 127 bits (140), Expect = 2e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24337 TGGAGCATATCAAACTCTTCCGTCGCATCCTTTCCAGCGAAAAGTATGATCGCCTTCTTG 24396 || ||||||||||| |||||||| |||||||| ||||| || || | || ||||| ||| Sbjct 180 TGCAGCATATCAAATTCTTCCGTGGCATCCTTACCAGCAAATAGSACAATGGCCTTTTTG 239 Query 24397 CCACCTGGATGATCTGGCAAAAACTTTGTGAGATCATACACGATATCTTTGATAATTACC 24456 || |||||||| || |||| |||||||||| ||||| || ||| | | ||| ||| Sbjct 240 CCTCCTGGATGGTCWGGCAGGAACTTTGTGACGTCATATACTTTATTGTGCAAAATAACC 299 Query 24457 CAACAATCTTCTTCGGTATTATGCTTCGCAATTTCAG 24493 || || ||| |||| || |||||||| |||| |||| Sbjct 300 CAGCAGTCTGCTTCTGTGTTATGCTTGGCAACCTCAG 336 >seq7861 Length=6948 Score = 105 bits (116), Expect = 8e-18 Identities = 275/419 (66%), Gaps = 3/419 (1%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||||||||| | ||||| ||| || |||| || | Sbjct 5050 CCTCAGCACATGCTTATGCGGGTCGCCGTGGGCATTCACCAAGAGAACATCGAGCAAGCT 4991 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | |||||||| || ||| | | || ||||| ||||| |||| || |||||| Sbjct 4990 ATCAAGACATACCACCTTATGAGCGAGCGTTGGTTCACACACGCGTCACCTACGCTCTTC 4931 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || ||| | || ||| || ||| |||||| | || || | || || ||| Sbjct 4930 AACGCCGGCACGCCACGCCCTCAGCTGAGCAGCTGCTTCTTGATTGCAATGAAAGACGAC 4871 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| | |||||||| | || || | ||||||||| ||| |||||| | || || Sbjct 4870 AGTATCGAAGGTATCTACGACACGCTGAAGGAGTGTGCTGCAATTTCAAAGAGCGCCGGA 4811 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || || || | |||||||| | | | | | | | |||||||| || || Sbjct 4810 GGGATCGGCCTCAACATCCATAACATCCGTTCTACCAGTAGTTACATTCGGGGCACCAAC 4751 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || || | || || | || |||||||| || || |||| ||| || |||||||| Sbjct 4750 GGAACCTCGAACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACACTGCCCGCTATGTC 4691 Query 75572 AATCAAGCGGGGCG---TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 |||| | || | || ||||| | |||| ||||| | ||||| ||||| || Sbjct 4690 GATCAGGGTGGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGAACCTTGGCACGC 4632 >seq27800 Length=2063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || ||| | || || ||||| |||||||| ||||||||||||| | ||||||||||| Sbjct 464 CGTCTTCTCGCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGCGCTATC 523 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||||||||||||||| || || ||||| || || |||| || || || || | Sbjct 524 TTTTGGTTGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCTCATCGCT 583 Query 65200 CGAGATGAGGG 65210 || || ||||| Sbjct 584 CGCGACGAGGG 594 >seq14094 Length=11654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 ||||||| ||| ||||||| || || | ||||| || || |||||| || ||||||| Sbjct 1786 CTATTTACTGGCTGAAGAAACGTGGATTGATGCCCGGGCTCACCTTCTCTAACGAACTTA 1845 Query 65195 TTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||||| ||||||||||||||| || ||||| Sbjct 1846 TTTCCCGTGATGAGGGTCTCCACTGCGACTTTGC 1879 >seq4982 Length=8950 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 166689 CCGATGCGAGTGAGAAGCATTTTCATTTGATTTGGTGTGCTATTTTGCATTTCGTCGGCG 166748 |||| ||||||||| ||||| |||||||| | | ||| |||||||| || || || Sbjct 3810 CCGAGGCGAGTGAGCAGCATCTTCATTTGCTGTCCTGTTGAGTTTTGCATCTCATCAGCA 3751 Query 166749 ATAATCACAGTGTTATTGAATGTTCTTCCACGCATGTAT-CCAAGGG 166794 | |||| || ||| || ||||| ||||||||||||||| |||| || Sbjct 3750 ACAATCCAAGAGTTCTTAAATGTCCTTCCACGCATGTATGCCAACGG 3704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269503119840