Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq195 158 2e-33 seq8895 104 4e-17 >seq195 Length=29407 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||||| ||||| ||||| || || | || ||||| || || | ||||| ||||| Sbjct 27233 AATTTAAATACCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATT 27174 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || ||||| || || ||||||||||| |||||||| |||| ||||| Sbjct 27173 GTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTG 27114 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||| ||||| || ||||| | |||| || || ||||| || Sbjct 27113 GTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGA 27054 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| || || ||||||||||||||||||| ||||| | |||||||||||| Sbjct 27053 AGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq8895 Length=8815 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 734 TCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTG 675 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | || |||||| || ||| ||| || || | || || Sbjct 674 TCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATG 615 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || |||||||| ||||| || ||||| Sbjct 614 GTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899201840099760