Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq30393 141 1e-28 seq195 104 3e-17 seq8895 86.0 9e-12 >seq30393 Length=6106 Score = 141 bits (156), Expect = 1e-28 Identities = 592/919 (64%), Gaps = 36/919 (4%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAA--TGATATTAAATTCA 17927 ||||| |||||| |||| || || || || |||||||| ||||| ||||||| | || Sbjct 877 TATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTT--TCCA 934 Query 17928 TAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTATAATAAT 17986 ||||||| |||||||| | ||| | | ||| | | | |||| | ||||||| Sbjct 935 TAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATA-TCCCAATTGTTTTAATAAT 993 Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046 | |||||| || ||||||| |||| ||||| || | ||||||||| | | || | Sbjct 994 CGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCA-TCCG 1052 Query 18047 AAA-GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105 | | || | | || | ||||||||||| || ||| |||| || || || || Sbjct 1053 ACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATT 1112 Query 18106 TATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAA 18165 || | | || || ||| | ||| || || | || | | | | || || || Sbjct 1113 ATGGACTATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGAAAA-AGAGTTA-CA-GCGAA 1169 Query 18166 ATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCAT 18225 || || || ||||||||||| ||||| || || || ||| | | |||||||| Sbjct 1170 CTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCAT 1229 Query 18226 TATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTC 18285 | ||||| |||||| | ||||||||| | ||| || |||||| | ||||| || Sbjct 1230 CAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTC 1289 Query 18286 AACGCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTA--TTTATTGCTCAGTATCCA 18342 || ||||| ||||||||||| | ||| || || | ||| ||||||| ||||| Sbjct 1290 CACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATTG------ATCCA 1343 Query 18343 TTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA 18402 |||||| ||||| | | ||| | | || || | | || |||||||| | Sbjct 1344 TTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAG 1403 Query 18403 ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCA-- 18460 || | |||| | | || |||||| || || || || || ||||| | | Sbjct 1404 ATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACT 1463 Query 18461 --GAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 |||| || | || || | ||| |||| ||||| | | ||| || ||| || Sbjct 1464 GTGAATAGATTCGTTGTATTG----TTGATAACTGTAAAAGGCACGAGCTTCTGGAATTT 1519 Query 18519 GAATCTC-GCTATAAAATCTTTCT-ACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 | | || | ||||| ||||| | | ||| |||||||| || || || | ||| Sbjct 1520 GCACTTCATCACTAAAA--TTTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGC 1577 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA--GATTGTTCCAT 18634 ||| |||||||| | || | |||||| || |||| || | | ||| | ||| Sbjct 1578 GAAGAATGCCAATATATTGCTTATGAAAAATTGTTCAGAGTCGTCCAACGAT--TCCCAA 1635 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 ||| | || ||||| | || ||||| ||||| ||| | | |||| | Sbjct 1636 TCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAAACTCGCTATAGCCTTT 1695 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTT 18754 | ||| |||| | ||| || ||| ||||| ||||||| |||||| || |||| Sbjct 1696 TCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATAATACATATCGATTTGGATTT 1755 Query 18755 TTTATTAACATAGGTTCTT 18773 | |||| |||||||||| Sbjct 1756 TCAATTAGGATAGGTTCTT 1774 >seq195 Length=29407 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||||| ||||| || || || |||||||| ||| | || || ||| ||| Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || |||||| || ||||| ||||| || || || || ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| ||||||||| ||| || || || | ||||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGA 27151 >seq8895 Length=8815 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| || || || || || || || || |||| Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| |||||||| || || || || ||| Sbjct 640 GACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAA 699 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||| | || || || || || ||||| Sbjct 700 CAAAGATTGATATTCGCGGGCAAACAACTGGAAGA 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731503840938800