Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq195 172 1e-37 seq8895 114 3e-20 >seq195 Length=29407 Score = 172 bits (190), Expect = 1e-37 Identities = 189/249 (76%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 192288 TATACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC 192347 |||| |||| | ||||| ||||| ||||| | ||| || || | |||||| || | || Sbjct 27242 TATA-TTTTGAATTTAA--ATACCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTC 27186 Query 192348 TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||| ||||| |||||| ||||||| | || ||||||||||| || ||||| || Sbjct 27185 TTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAAT 27126 Query 192408 TAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT 192467 |||| ||||| || ||||| |||||||| ||||| || |||||| ||||| ||| Sbjct 27125 CAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATC 27066 Query 192468 TATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 ||| | |||||| ||||| || || || || || |||||||| ||||| ||||| ||||| Sbjct 27065 TATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAA 27006 Query 192528 TATCTGCAT 192536 ||| ||||| Sbjct 27005 TATTTGCAT 26997 >seq8895 Length=8815 Score = 114 bits (126), Expect = 3e-20 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 192298 AGTTTAATAATACCACCTCTA---AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 || ||| | ||| |||||| | ||||| | || | || | ||||| ||||| | Sbjct 821 AGCTTACTCATAACACCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGG 762 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| | ||| || | || |||| |||||| || || || || ||||| Sbjct 761 ATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTT 702 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| |||||||| ||||||||||| ||||| ||||| || || || |||| Sbjct 701 TGTTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTG 642 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || | || ||||| |||||||| | ||||| | ||| |||||| Sbjct 641 TCAGAACTCTCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGC 582 Query 192535 AT 192536 || Sbjct 581 AT 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983972388883050