Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4015 304 4e-77 seq3475 109 2e-18 seq7861 105 2e-17 seq32895 89.7 2e-12 seq22762 84.2 6e-11 seq195 84.2 6e-11 >seq4015 Length=12234 Score = 304 bits (336), Expect = 4e-77 Identities = 447/628 (71%), Gaps = 6/628 (1%) Strand=Plus/Plus Query 86002 AAACAAAAAATGGACGAATATTTAGTATGGTGCGACGAATGGATTAAGGAATGTATTAGA 86061 |||||| ||||| | |||||| | ||||| || |||||||| || |||||||| | Sbjct 1671 AAACAAGAAATGAATACTTATTTATTGTGGTGTGATGAATGGATAAATCAATGTATTCGT 1730 Query 86062 ATTTTGAAACCGAATGGAACGTTATATATTTACGGTTTTAGTGAGATATTAGCATTTATT 86121 || || | |||| |||||| | || || || ||||||||||| || ||| | |||||| Sbjct 1731 ATCTTAATACCGTCTGGAACTCTTTACATATATGGTTTTAGTGAAATCTTATCTTTTATT 1790 Query 86122 AGAGTAAGGATTAATATCAATGTGAGATGGATTATTTGGCACTATACAAATAAGGTTACG 86181 ||| ||| || ||||| ||||| ||||| | || ||||| ||||| || ||||| | Sbjct 1791 AGAACAAGAATCAATATAAATGTACGATGGTTGATATGGCATTATACTAACAAGGTATCA 1850 Query 86182 CCATCATTAAATATGTGGCAAAGGACACACGAAAGCATTCTGTGCTGTTATAAAAATAAA 86241 || | |||||| | |||||| | |||||||||| || | || ||||||||| ||| Sbjct 1851 CCGTTATTAAACTTTTGGCAACGATCACACGAAAGTATATTATGTTGTTATAAATCAAAA 1910 Query 86242 CCTGTATTTAATAGGGATGATGTTCGCGAGCCATATACTGCCACATTCTTAAAGAATTCC 86301 || ||||||||| |||||| |||| || |||||||| | || |||| ||| Sbjct 1911 CCGATATTTAATAAAGATGATATTCGTGAACCATATACCGAAGCACGTATAAACAAT--- 1967 Query 86302 GTTGGTAAAGTTCGCACAGCGACAAAGGGTAGATTTAGCACCGGCGAAAAAGAAACTACA 86361 ||| ||| | || | ||| || || || ||||||| ||| ||| |||||| | Sbjct 1968 ATTGAAAAAATACGAAAAGCTACGAAAGGAAGATTTATTGACGG-TAAACTGAAACTGTA 2026 Query 86362 TATACAGCCCACGAGAATGGAGCACTACCAAGAGATGTAATTAAGATATCGGCACT-AGC 86420 || | || || || || || || | |||||||||| |||||| ||||| | | ||| Sbjct 2027 TACAAAGGACATGAAAACGGTGCTCAGCCAAGAGATGCAATTAAAATATCATCGTTGAGC 2086 Query 86421 TGGTGGTGCTGGCAAAAAAGAGCGTGTTAATCACCCTACACAAAAACCACTTGAATTATG 86480 |||||| |||| ||||| || || ||||| ||||| |||||||| | || || || Sbjct 2087 -GGTGGTTCTGGTGCGAAAGAACGAGTCAATCATCCTACTAAAAAACCATTCGATTTGTG 2145 Query 86481 TGAAAAGTTAATCAAAGCAACTATGAATAAGGGCGGTGAAACATTGGTAGTTGTTCCTTT 86540 | |||| ||| | |||||| | |||||||| | | | || |||| ||||||| Sbjct 2146 TAAAAAATTATTAAAAGCATCAATGAATAAACATGATAATGCAAAATTAGTAATTCCTTT 2205 Query 86541 TGCTGGTTCAGGTAGCGAATGTGTTGCGGCaaaaaaaTTAGATGTTAATTTTATTGGCTT 86600 || || || || || |||||||| || || ||| | | | | || |||| || || || Sbjct 2206 TGTAGGATCGGGGAGTGAATGTGTCGCAGCGAAACATCTCGGTATTGATTTCATCGGATT 2265 Query 86601 TGAAATAAATAATGAATATGTTGATTTA 86628 |||| | ||||| || ||| ||||| || Sbjct 2266 TGAATTGAATAAAGAGTATATTGATATA 2293 >seq3475 Length=17180 Score = 109 bits (120), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 182542 AGGTCACCATTGCGCGAGATAGTGCAGGTTACACGACGACCGAAATCAGCCTGACCGTTG 182601 || ||||||||||| ||| ||| |||| ||| |||| | || ||||||| Sbjct 1591 AGATCACCATTGCGACTGATGGTGGTCGTTAATCGATTACCGGGTTTCACCGTACCGTTG 1532 Query 182602 AAAGTCTGCTCAATAGACTCCATCGCGAAGTGGGTGTGGCGACGGTAAGTCACTTTCCAG 182661 | ||||| |||||||| ||||| || |||| ||||||||| || || |||||| | Sbjct 1531 ATGGTCTGTTCAATAGATTCCATGGCAAAGTTGGTGTGGCGGCGATAGACCACTTTGAAA 1472 Query 182662 AATGTAATCTGGGGATTACCAGTCAGGTAAACATCTTGGGCCCCGTAGGCAACTAATTGC 182721 || | || | || ||||| || | | | |||||||| || || || || || | |||| Sbjct 1471 AAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACAAGTTGC 1412 Query 182722 ATAAGTCCTCCAGCCA--ttttttttATAATATGGGTGAAGaaaaaaaTTTT 182771 || | ||||||| ||| ||| || |||| ||| ||||||| |||||| Sbjct 1411 ATTAATCCTCCACCCATGTTTGTTATATACTATACCAAAAGAAAATAATTTT 1360 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 182595 ACCGTTGAAAGTCTGCTCAATAGACTCCATCGCGAAGTGGGTGTGGCGACGGTAAGTCAC 182654 ||| |||| ||| || | |||||||||||| || || | |||||||||||| || || Sbjct 2942 ACCATTGAGAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACAAC 2883 Query 182655 TTTCCAGAATGTAATCTGGGGATTACCAGTCAGGTAAACATCTTGGGCCCCGTAGGCAAC 182714 ||| | || | || | || ||||| || | | | |||||||| || || || || || Sbjct 2882 TTTGAAAAAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGAC 2823 Query 182715 TAATTGCATAAGTCCTCCAGCCAtttttt 182743 | |||||| | |||||| |||| |||| Sbjct 2822 GAGTTGCATTAATCCTCCTCCCATGTTTT 2794 >seq7861 Length=6948 Score = 105 bits (116), Expect = 2e-17 Identities = 206/304 (68%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCAC---CCTGATCTACATACCGA 156083 || || || || || || ||| ||| || | ||| |||| ||||||| ||||| || Sbjct 4641 GGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCGACATAGCGG 4700 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 ||||| | |||||||||| |||||||| | || || || || || || ||||| || Sbjct 4701 GCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCGTTGGTGCCC 4760 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||||| | || | || || | ||||| || | || || || || || | | Sbjct 4761 CGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCCCTCCGGCGCTC 4820 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || |||||| ||| || ||||| | || | | | |||||||| ||| || |||| | Sbjct 4821 TTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATACTGTCGTCTTTC 4880 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 |||| | | |||| || | ||||| ||||| || || |||||||| || ||| Sbjct 4881 ATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGTTGAAGAGCGTA 4940 Query 156324 GGTG 156327 |||| Sbjct 4941 GGTG 4944 >seq32895 Length=1541 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 182595 ACCGTTGAAAGTCTGCTCAATAGACTCCATCGCGAAGTGGGTGTGGCGACGGTAAGTCAC 182654 ||| || ||||| || | |||||||||||| || || | |||||||||||| || ||| Sbjct 1386 ACCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAATTGGTGTGGCGACGATAGACCAC 1445 Query 182655 TTTCCAGAATGTAATCTGGGGATTACCAGTCAGGTAAACATCTTGGGCCCCGTAGGCAAC 182714 ||| | || | || | || ||||| || | | | |||||||| || || || || || Sbjct 1446 TTTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGAC 1505 Query 182715 TAATTGCATAAGTCCTCCAGCCAtttttt 182743 | |||||| | |||||| |||| |||| Sbjct 1506 GAGTTGCATTAATCCTCCTCCCATGTTTT 1534 >seq22762 Length=2761 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 182595 ACCGTTGAAAGTCTGCTCAATAGACTCCATCGCGAAGTGGGTGTGGCGACGGTAAGTCAC 182654 ||| || ||||| || | |||||||||||| || |||| |||||||| || || ||| Sbjct 495 ACCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAGTTAGTGTGGCGGCGATAGACCAC 436 Query 182655 TTTCCAGAATGTAATCTGGGGATTACCAGTCAGGTAAACATCTTGGGCCCCGTAGGCAAC 182714 ||| | || | || | || ||||| || | | | |||||||| || || || || || Sbjct 435 TTTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAAGCGAC 376 Query 182715 TAATTGCATAAGTCCTCCAGCCAtttttt 182743 | |||||| | |||||| |||| |||| Sbjct 375 GAGTTGCATTAATCCTCCTCCCATGTTTT 347 >seq195 Length=29407 Score = 84.2 bits (92), Expect = 6e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || || || ||||| || | |||||| ||||||||||| || || || | |||||||||| Sbjct 4179 GAAGCTCCATGTGATATGACACAATCGCGCTCCATTTCTCCAAAGCGTAAACCACCATCG 4120 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTA 251601 || | | || ||| |||| || ||||| | | | || ||| || | || | Sbjct 4119 CGTGTGCGTCCTTCGACAGGTTGTCGAGTTAAAATTTGCAAAGGGCCTTTATTTCGAGAA 4060 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || ||||||| |||||||| || ||||| |||||| ||| || || || ||||| Sbjct 4059 TGGATTTTATCATCCACCATATGTTTCAGACGTTGGTAGTATGTAGGTCCTATAAAGAT 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471058711067891