Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7861 127 2e-23 seq27800 114 2e-19 seq18178 109 7e-18 seq6362 98.7 1e-14 seq4459 96.9 4e-14 seq1570 93.3 5e-13 seq2397 89.7 6e-12 seq5010 87.8 2e-11 >seq7861 Length=6948 Score = 127 bits (140), Expect = 2e-23 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1627321 TTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATG 1627380 |||| || ||| |||| |||||||| || ||||| ||||| | || | |||||| Sbjct 2859 TTGAGCAAGTGCTGGTTCACCACGGTGAACTCGCCGCTCAGCACCCTCCGGGCATAGATG 2918 Query 1627381 TTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTG 1627440 ||| | ||| |||| | |||| ||||||||||||||||||| || | ||||||| Sbjct 2919 TTGCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCCGTG 2978 Query 1627441 GGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTGCT 1627480 |||||| | ||||||||||| |||||||||| |||||||| Sbjct 2979 GGCATGGGAGCCACGAGGAGGGAGTTGCGCACGCCGTGCT 3018 >seq27800 Length=2063 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | |||||||| |||||||| || ||||| || ||||||||| Sbjct 594 CCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCCGGCATCAGTCCGCGCTTC 535 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 || | ||||||||| ||||||||||| | ||||| ||||||||||| ||| Sbjct 534 TTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATGCCCTCCACG 484 >seq18178 Length=3647 Score = 109 bits (120), Expect = 7e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||||||| ||| ||||||||||||| ||||||| ||||| || | || Sbjct 2546 GCTTGGCGAGTTCGCCGGGCAGGATCAGGCGCACGCCGGTCTGAATCTCACGGGACGTGA 2605 Query 1254403 TCGTGTTGCG-CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | || | || |||||| | ||| || | | | ||| | || |||| Sbjct 2606 TGGT-TGGCTTCTTGTTGTACCTCGCAAGCTTGGCAGACTCACCAGCAATCTTCTCGAAA 2664 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || ||||||| || |||||||||| ||| | |||| | |||||||| ||| ||| Sbjct 2665 ATATCGTTGATGAAAGAGTTCATGATGCTCATGGCCTTGCTTGAGATGCCAGTGTCAGGG 2724 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||||||| Sbjct 2725 TGCACCTGCTTGAGCACCTTGTAGATG 2751 >seq6362 Length=12758 Score = 98.7 bits (108), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG---TGCCGATC 1254404 || || |||||| ||| |||||||||||| ||||||| || || || | || | || Sbjct 4818 GCGAGCTCGCCGGGCAGGATCAGGCGCACACCGGTCTGAATTTCACGGGAAGTGATGGTC 4877 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 | || |||||| | |||||| | | | ||| |||| |||| || Sbjct 4878 GGCTT---CTTGTTGTACCTCGCCAGCTTGGCAGACTCACCAGCGATCTTCTCGAAAATA 4934 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| || |||||||||| ||| | |||| ||||||| || ||| |||||| Sbjct 4935 TCGTTGATGAAAGAGTTCATGATACTCATAGCCTTGCTGGAGATCCCAGTGTCAGGGTGC 4994 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||||||| Sbjct 4995 ACCTGCTTGAGCACCTTGTAGATG 5018 >seq4459 Length=9375 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||| | |||||||| || || || |||||||| | || ||||| Sbjct 2197 CCTTCGTCACGAGCGATAAGCTCGTTGCTGAAAGCTAGTCCGGGCATCAATCCCCGCTTT 2138 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 || ||| | || ||||| |||||||| ||||||||||||||||||| ||| Sbjct 2137 TTCAGCAAGAATATGGCACAGAAACTCGCCGAGAAAAAGATGCCCTCCACG 2087 >seq1570 Length=19022 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||| | |||||||| || | || |||||||| || || |||| Sbjct 12091 CCTTCGTCGCGCGCGATGAGCTCGTTGCTGAACGACAGACCGGGCATCAGCCCCTGCTTT 12150 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||||||||||||| |||||| | |||||||| |||||||||||| ||||| Sbjct 12151 TTCATGTAAAAGATGGCGCAAAAACTGGCGGAGAAAAATATGCCCTCGACGCACGCAAA 12209 >seq2397 Length=20697 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 || |||||||| || ||| ||| ||||| | || | ||||| ||||| ||||| || Sbjct 12880 GCACAGCAGGCGCTCCGGCGCACGATGGAGATCTACTCGAACACCACGCGATTTGCACTT 12939 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGC 1574237 || |||||| |||||| | |||| ||| || ||||||| |||||||||||| | ||| Sbjct 12940 GCATGCAACCTGTCGTCCAAAATCATTGAGCCCATCCAAAGCCGCTGCGCCATTATCCGC 12999 Query 1574238 TT 1574239 || Sbjct 13000 TT 13001 >seq5010 Length=11600 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||| | ||| | |||| ||||||| || | Sbjct 7103 TCGAAAATGTCGTTGATGAAAGAGTTCATAATGCTCATGGCCTTGCTGGAGATACCGGTG 7162 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||||||||||||||||||| Sbjct 7163 TCAGGGTGCACCTGCTTGAGCACCTTGTAGATG 7195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103836670962031