Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq195 95.1 2e-14 >seq195 Length=29407 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 194568 TGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACA 194627 ||||||| ||| ||| ||| || |||||||| || || || ||||| ||||| ||||| Sbjct 3979 TGGTAAATTAATGGAAGGTAATATCTTTATAGGACCTACATACTACCAACGTCTGAAACA 4038 Query 194628 CATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTAACTACTTTACATCGACA 194687 ||||| | |||||||| ||| || ||| | | || | | | |||| |||||| Sbjct 4039 TATGGTGGATGATAAAATCCATTCTCGAAATAAAGGCCCTTTGCAAATTTTAACTCGACA 4098 Query 194688 ACCAAATTGT----GGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 194743 ||| ||| || || | | | ||| |||||| | |||||||||||||| | Sbjct 4099 ACC----TGTCGAAGGACGCACACGCGATGGTGGTTTACGCTTTGGAGAAATGGAGCGCG 4154 Query 194744 ACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATTCTG 194803 | ||| | || ||||| ||| | || || ||||| ||| | ||||||| |||| | Sbjct 4155 ATTGTGTCATATCACATGGAGCTTCACATTTTTTAAAAGAACGTTTGTTTTTACATTCAG 4214 Query 194804 A 194804 | Sbjct 4215 A 4215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632171434012840