Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq195 134 1e-26 seq12187 116 3e-21 seq8895 116 3e-21 seq7861 91.5 1e-13 seq21550 84.2 2e-11 seq19263 82.4 7e-11 >seq195 Length=29407 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||||| ||||| |||| ||||||||||| || ||||| || ||| | | Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| | ||||| || ||||| || || |||||||| || ||||| ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| ||||| || ||||| |||| || ||||| || ||||| || Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || |||| | |||||||| || | ||||| Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGG 27223 >seq12187 Length=9842 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 24708 AGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACA 24767 ||||||| | ||||| || ||||| || || || ||||| || || || | | |||| Sbjct 9842 AGATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACA 9783 Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827 | | || | || || ||||| || || || || || || |||||||| || || | Sbjct 9782 CTATTGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGC 9723 Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTC 24887 | ||||| ||||||||||| ||||||||||| | | | || | || || || || | Sbjct 9722 GGTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCC 9663 Query 24888 AAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | ||||| || || || ||||||||| |||| |||| |||||| Sbjct 9662 AGAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGTGGAGGC 9619 >seq8895 Length=8815 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | |||||||| || ||||| || || || | || ||||| Sbjct 577 ACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGT 636 Query 24761 ACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | ||||| | || |||| || | ||| || ||||||||||||||||| || || || Sbjct 637 TCTGACACTATTGACAACGTCAAGGCCAAA-ATTCAAGACAAAGAAGGAATCCCACCTGA 695 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 |||||| | ||||| || || || ||||| ||||| || | | | || | ||||| Sbjct 696 CCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTA 755 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || || ||| | ||| | || | || ||||| Sbjct 756 CAACATCCAAAAAGAATCTACTCTTCACCTCGTGCTTCGTCTACGTGGAGG 806 >seq7861 Length=6948 Score = 91.5 bits (100), Expect = 1e-13 Identities = 218/329 (66%), Gaps = 3/329 (1%) Strand=Plus/Plus Query 139508 CAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGAT 139564 |||||||||| ||||| || |||||||| | || || || || || ||||| |||| Sbjct 4630 CAGCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGAT 4689 Query 139565 CGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTC 139624 |||| | || ||| | ||||| || || | ||| || | | ||| ||| |||| Sbjct 4690 CGACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTC 4749 Query 139625 CGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTC 139684 ||||||||| || ||| ||| || || |||| || ||| | |||| |||||| | Sbjct 4750 CGTTGGTGCCCCGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCC 4809 Query 139685 CGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGC 139744 | ||| | || || ||| | | || || | || ||||| |||||| || | Sbjct 4810 CTCCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATAC 4869 Query 139745 TGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTG 139804 ||||||| | ||| | | || ||||| || || || || ||||||||| Sbjct 4870 TGTCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGT 4929 Query 139805 CAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || ||||| |||||| |||||| Sbjct 4930 TGAAGAGCGTAGGTGACGCGTGTGTGAAC 4958 >seq21550 Length=3044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || || |||||||| || || || || || || || | |||||||||| || || Sbjct 2523 AAAATTCAGGACAAAGAGGGCATCCCCCCGGACCAGCAGAGACTGATCTTTGCGGGAAAG 2582 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | || |||| || ||||| |||||||| || || || ||| Sbjct 2583 CAGCTGGAGGATGGGCGCACACTGGCAGACTACAACATCCAAAAGGAGTCCACCCTGCAC 2642 Query 24908 TTGGTGTTGCG 24918 ||||| |||| Sbjct 2643 CTGGTGCTGCG 2653 >seq19263 Length=3464 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24793 CCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 ||| || || || || || || || || || || || |||||||||||||| ||||| || Sbjct 2845 CCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGCGATTGATCTTTGCCGGTAAACAACT 2786 Query 24853 GGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| | | | | | || ||||||||||||||||| || || || |||||||| Sbjct 2785 TGAGGATGGACGTACCCTTGCTGACTATAACATTCAAAAGGAGTCAACGCTGCACTTGGT 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449671284636040