Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18178 150 3e-30 seq5010 134 2e-25 seq6362 131 3e-24 seq17319 127 3e-23 seq3112 122 1e-21 seq7861 118 2e-20 seq1495 118 2e-20 seq13257 113 7e-19 seq27800 102 1e-15 seq21416 100 5e-15 seq17709 100 5e-15 seq4459 96.9 5e-14 seq4510 95.1 2e-13 seq1570 89.7 8e-12 seq17514 87.8 3e-11 seq23743 86.0 1e-10 >seq18178 Length=3647 Score = 150 bits (166), Expect = 3e-30 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || || |||||| |||| ||||||||| ||| Sbjct 2507 TGAACTTGGTCACGGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCGAGTTCGCCGGGCA 2566 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTG 1485588 ||||||||||||| ||||||| ||||| |||| ||| || | || |||||| Sbjct 2567 GGATCAGGCGCACGCCGGTCTGAATCTCACGGGACGTGATGGT-TGGCTTCTTGTTGTAC 2625 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||| || | | | ||| | || |||| || ||||||| || |||||| Sbjct 2626 CTCGCAAGCTTGGCAGACTCACCAGCAATCTTCTCGAAAATATCGTTGATGAAAGAGTTC 2685 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| | |||||||| ||| |||||||||||||||||||||||| Sbjct 2686 ATGATGCTCATGGCCTTGCTTGAGATGCCAGTGTCAGGGTGCACCTGCTTGAGCACCTTG 2745 Query 1485709 TA 1485710 || Sbjct 2746 TA 2747 >seq5010 Length=11600 Score = 134 bits (148), Expect = 2e-25 Identities = 187/258 (72%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 1485454 GCGTTGATGGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTG 1485513 ||||| | |||| | || ||||||| ||||||||||| ||||| ||||| |||||| | Sbjct 6936 GCGTTTA-GGCACTGGTGAACTTGGTCACGGCCTTGGTTCCCTCAGAGACTGCGTGCTTA 6994 Query 1485514 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 || || || ||| ||| ||||| |||||| | ||||| ||||| |||| ||| || Sbjct 6995 GCGAGCTCACCGGGCAGGATCAAGCGCACACCAGTCTGAATCTCCCGGGACGTGATGGT- 7053 Query 1485574 TTGC-GCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | || |||||| | |||||| | | | ||| | || |||| ||||| Sbjct 7054 TGGCTTCTTGTTGTACCTCGCCAGCTTGGCCGACTCACCAGCAATCTTCTCGAAAATGTC 7113 Query 1485633 GTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCAC 1485692 ||||| || |||||||| || ||| | ||| ||||||| || ||| |||||||| Sbjct 7114 GTTGATGAAAGAGTTCATAATGCTCATGGCCTTGCTGGAGATACCGGTGTCAGGGTGCAC 7173 Query 1485693 CTGCTTGAGCACCTTGTA 1485710 |||||||||||||||||| Sbjct 7174 CTGCTTGAGCACCTTGTA 7191 >seq6362 Length=12758 Score = 131 bits (144), Expect = 3e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || || ||| | || || |||||| ||| Sbjct 4774 TGAACTTGGTCACTGCCTTGGTGCCCTCAGACACCGCATGCTTCGCGAGCTCGCCGGGCA 4833 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG---TGCCGATCGTGTTGCGCTTGTTAG 1485586 |||||||||||| ||||||| || || |||| || | ||| || |||||| Sbjct 4834 GGATCAGGCGCACACCGGTCTGAATTTCACGGGAAGTGATGGTCGGCTT---CTTGTTGT 4890 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||||| | | | ||| |||| |||| || ||||||| || |||| Sbjct 4891 ACCTCGCCAGCTTGGCAGACTCACCAGCGATCTTCTCGAAAATATCGTTGATGAAAGAGT 4950 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||| | ||| ||||||| || ||| |||||||||||||||||||||| Sbjct 4951 TCATGATACTCATAGCCTTGCTGGAGATCCCAGTGTCAGGGTGCACCTGCTTGAGCACCT 5010 Query 1485707 TGTA 1485710 |||| Sbjct 5011 TGTA 5014 >seq17319 Length=6068 Score = 127 bits (140), Expect = 3e-23 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || ||||| || || |||||| | || || ||||| ||| || Sbjct 3579 ACTTGGTCACTGCCTTCGTGCCCTCAGACACCGCGTGCTTCGCGAGCTCGCCAGGCAGGA 3520 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG-CTTGTTAGTGCGC 1485591 ||||||| || ||||||| |||||||| | ||| || | || |||||| | | Sbjct 3519 TCAGGCGTACACCGGTCTGAATCTCGCGCGAAGTGATGGT-TGGCTTCTTGTTGTACCTC 3461 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| | | | ||| | || |||| || ||||||| || ||||||||| Sbjct 3460 GCCAGCTTGGCAGACTCACCAGCAATCTTCTCGAAGATATCGTTGATGAAAGAGTTCATG 3401 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | |||| | |||||||| ||| |||||||||||||||||||||||||| Sbjct 3400 ATGCTCATGGCTTTGCTAGAGATGCCAGTGTCAGGGTGCACCTGCTTGAGCACCTTGTA 3342 >seq3112 Length=15563 Score = 122 bits (134), Expect = 1e-21 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || || |||||| | || || |||||| ||| || Sbjct 4499 ACTTGGTCACTGCCTTGGTGCCCTCAGACACCGCGTGCTTCGCGAGCTCGCCGGGCAGGA 4440 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 |||||||||| ||||||| ||||| |||| ||| || | || |||||| | | Sbjct 4439 TCAGGCGCACACCGGTCTGTATCTCACGGGAAGTGATGGT-TGGCTTCTTGTTGTACCTC 4381 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| | | | ||| | || |||| || ||||||| || ||||||||| Sbjct 4380 GCCAGCTTGGCAGACTCACCAGCAATCTTCTCGAAGATATCGTTGATGAAAGAGTTCATG 4321 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | ||| | || || || ||| |||||||| ||||||||||||||||| Sbjct 4320 ATGCTCATGGCCTTGCTAGAAATACCAGTGTCTGGGTGCACTTGCTTGAGCACCTTGTA 4262 >seq7861 Length=6948 Score = 118 bits (130), Expect = 2e-20 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2069592 GACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTT 2069651 || || ||| |||| |||||||| || ||||| ||||| | || | |||||||| Sbjct 2861 GAGCAAGTGCTGGTTCACCACGGTGAACTCGCCGCTCAGCACCCTCCGGGCATAGATGTT 2920 Query 2069652 GCTCGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGG 2069711 ||| ||| |||| | |||| ||||||||||||||||||| || | ||||||||| Sbjct 2921 GCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCCGTGGG 2980 Query 2069712 CATGAGCGCCACGAGCAGCGAGTTGCGCAGGCCGTACT 2069749 |||| | |||||||| || |||||||||| ||||| || Sbjct 2981 CATGGGAGCCACGAGGAGGGAGTTGCGCACGCCGTGCT 3018 >seq1495 Length=21297 Score = 118 bits (130), Expect = 2e-20 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||||||||| ||||| || || |||||| | || || |||||| ||| || Sbjct 16457 ACTTGGTCACGGCCTTGGTGCCCTCAGACACTGCGTGCTTCGCGAGCTCGCCGGGCAGGA 16516 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 ||||||||||| ||||||| ||||| || | ||| || | || |||||| | | Sbjct 16517 TCAGGCGCACGCCGGTCTGAATCTCACGAGACGTGATGGT-TGGCTTCTTGTTGTACCTC 16575 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || | | | ||| | || |||| || || |||| || || ||||| Sbjct 16576 GCAAGCTTGGCAGACTCACCAGCAATCTTCTCGAAGATATCATTGATGAAAGAATTCATA 16635 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | ||| | ||||| || ||| |||||||||||||||||||||||||| Sbjct 16636 ATGCTCATGGCCTTGCTAGAGATACCAGTGTCAGGGTGCACCTGCTTGAGCACCTTGTA 16694 >seq13257 Length=7581 Score = 113 bits (124), Expect = 7e-19 Identities = 177/252 (70%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||| || ||||| || ||||| || || |||||| | || || || Sbjct 5853 GGCACTGGTGAACTTGGTCACCGCCTTAGTGCCCTCAGACACTGCGTGCTTCGCGAGCTC 5794 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCG 1485578 |||| ||| ||||||||||| ||||||| ||||| ||| || | ||| || Sbjct 5793 GCCGGGCAGAATCAGGCGCACACCGGTCTGAATCTCACGGGACGTAATGGTCGGCTT--- 5737 Query 1485579 CTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||||| | ||| || | | ||| |||| |||| || ||||||| Sbjct 5736 CTTGTTGTACCTCGCAAGCTTAGCAGACTCACCAGCGATCTTCTCGAAAATATCGTTGAT 5677 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||||||||| ||| | ||| | ||||| || ||| |||||||||||||| Sbjct 5676 GAAAGAGTTCATGATGCTCATGGCCTTGCTAGAGATTCCGGTGTCCGGGTGCACCTGCTT 5617 Query 1485699 GAGCACCTTGTA 1485710 |||||||||||| Sbjct 5616 GAGCACCTTGTA 5605 >seq27800 Length=2063 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | |||||||| ||| ||| || ||||| || ||||||||| Sbjct 594 CCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCCGGCATCAGTCCGCGCTTC 535 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 794451 || | ||||||||| || |||||||| | ||||| ||||||||||| ||| Sbjct 534 TTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATGCCCTCCACG 484 >seq21416 Length=3035 Score = 100 bits (110), Expect = 5e-15 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||| |||||||| || ||||| || || |||||| | || || || Sbjct 2061 GGCACTGGTGAACTTGGTCACGGCCTTAGTGCCCTCAGACACTGCGTGCTTCGCGAGCTC 2120 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCG 1485578 ||| ||| ||||||||||| ||||||| ||||| ||| || | ||| || Sbjct 2121 ACCGGGCAGAATCAGGCGCACACCGGTCTGAATCTCACGGGACGTAATGGTCGGCTT--- 2177 Query 1485579 CTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||||| | ||| || | | ||| | | || |||| || ||||| | Sbjct 2178 CTTGTTGTACCTCGCAAGCTTAGCAGACTCACCGGCAATCTTCTCGAAAATATCGTTAAT 2237 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || |||||||| || | | | ||| | ||||| || ||| |||||||||||||| Sbjct 2238 GAAAGAGTTCATTATGCTCGTGGCCTTGCTAGAGATTCCGGTGTCCGGGTGCACCTGCTT 2297 Query 1485699 GAGCACCTTGTA 1485710 |||||||||||| Sbjct 2298 GAGCACCTTGTA 2309 >seq17709 Length=8485 Score = 100 bits (110), Expect = 5e-15 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| ||||| |||||| | || || |||||| ||| || Sbjct 4082 ACTTGGTCACTGCCTTGGTGCCCTCAGAGACCGCGTGCTTCGCGAGCTCGCCGGGCAGGA 4141 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||||||| ||||||| |||||||||| Sbjct 4142 TCAGGCGCACACCGGTCTGAATCTCGCGGG 4171 >seq4459 Length=9375 Score = 96.9 bits (106), Expect = 5e-14 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCT-AAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| ||| | |||||||| ||||| || |||||||| | || ||||| Sbjct 2197 CCTTCGTCACGAGCGATAAGCTCGTTGCTGAAAGCT-AGTCCGGGCATCAATCCCCGCTT 2139 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 794451 || ||| | || |||||||||||||| ||||||||||||||||||| ||| Sbjct 2138 TTTCAGCAAGAATATGGCACAGAAACTCGCCGAGAAAAAGATGCCCTCCACG 2087 >seq4510 Length=15649 Score = 95.1 bits (104), Expect = 2e-13 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| ||||||||||| ||||| || || |||||| ||||||| || ||| | | |||| Sbjct 8126 TTGGTAACGGCCTTGGTGCCCTCGGATACTGCGTGCTTGGCCAGCTCTCCGGGAAGGATC 8067 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT--GTTGCGCTTGTTAGTGCGCG 1485592 || || ||| | || ||||||||||| | ||| || ||| ||||| ||| | Sbjct 8066 AGACGAACGCCAGTTTGGATCTCGCGAGAAGTGATAGTAGGTT--TTTTGTTGTAGCGGG 8009 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | | ||| |||| |||| |||||||||| || |||||||||| Sbjct 8008 CAAGCTTTGCAGACTCTCCAGCGATCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 7949 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 | ||| | ||| | ||||| || ||| || |||||||| || | ||||| || Sbjct 7948 TACTCATAGCCTTGCTCGAGATACCAGTGTCAGGATGCACCTGTTTCAAAACCTTATA 7891 >seq1570 Length=19022 Score = 89.7 bits (98), Expect = 8e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||| | |||||||| || | || |||||||| || || |||| Sbjct 12091 CCTTCGTCGCGCGCGATGAGCTCGTTGCTGAACGACAGACCGGGCATCAGCCCCTGCTTT 12150 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || | |||||||||| || |||||| | |||||||| |||||||||||| ||||| Sbjct 12151 TTCATGTAAAAGATGGCGCAAAAACTGGCGGAGAAAAATATGCCCTCGACGCACGCAAA 12209 >seq17514 Length=4101 Score = 87.8 bits (96), Expect = 3e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || || || ||| | || || |||||| | | || Sbjct 2091 ACTTGGTCACTGCCTTGGTGCCCTCAGACACCGCRTGCTTCGCGAGCTCGCCGGGAAGGA 2032 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||||||| ||||||| |||||||||| Sbjct 2031 TCAGGCGCACACCGGTCTGAATCTCGCGGG 2002 >seq23743 Length=4914 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || || || ||| | || || |||||| ||| || Sbjct 2676 ACTTGGTCACTGCCTTGGTGCCCTCAGACACCGCATGCTTCGCGAGCTCGCCGGGCAGGA 2617 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||||||| ||||||| ||||| |||| Sbjct 2616 TCAGGCGCACACCGGTCTGAATCTCACGGG 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911965568541677