Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq21550 107 1e-18 seq19263 89.7 3e-13 >seq21550 Length=3044 Score = 107 bits (118), Expect = 1e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| |||||| || ||||| ||||| | || ||||| |||| Sbjct 2651 CAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATC 2592 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||||| || |||||||||| |||||||| | || | ||||| ||||| Sbjct 2591 CTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTC 2532 Query 34885 GTTTATTTTTTG-TTTGACGGATGCTATCGATTCATT-GGCCTCGACATCAACGGTTATG 34942 | ||||| ||| || | | |||| ||| | || | | || || | || ||| Sbjct 2531 CTGAATTTTCGCCTTTAACTCCT-CAATCGTGTCACTAGGACAC-ACGTCCAAAGTGATG 2474 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| | || | |||||| Sbjct 2473 GTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq19263 Length=3464 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||||||||| | ||| | || |||| || ||||| || ||||| || Sbjct 2743 CTCCTTTTGAATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGTTTACCGGCAAA 2802 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||| ||||||||| | || | ||||||||| || Sbjct 2803 GATCAATCGCTGCTGGTCTGGGGGAATCCCCTCCTTATC 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325533060200417