Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq21550 102 6e-17 seq12187 82.4 6e-11 >seq21550 Length=3044 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || ||||| ||| | ||| ||| ||||||||||| || | |||||| || ||||||||| Sbjct 2532 GACAAAGAGGGCATCCCCCCGGACCAGCAGAGACTGATCTTTGCGGGAAAGCAGCTGGAG 2591 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | ||| |||| ||||||||||| ||||||||||| || ||||| ||||| || Sbjct 2592 GATGGGCGCACACTGGCAGACTACAACATCCAAAAGGAGTCCACCCTGCACCTGGTGCTG 2651 Query 107769 AGATTGCGAGGGGG 107782 | | || ||||| Sbjct 2652 CGCCTCCGTGGGGG 2665 >seq12187 Length=9842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| ||||| || ||| | || || |||||| | | |||| ||| || || Sbjct 9762 AAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGGTTGATTTTTGCCGGGAAG 9703 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 ||||||||||||| || ||||||||||||| || || |||||||| ||| ||||| Sbjct 9702 CAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCAGAAGGAGTCCACGCTGCAC 9643 Query 107760 ATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || | |||| || || Sbjct 9642 TTGGTGCTGCGCCTGCGTGGAGG 9620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398681166261427