Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8895 143 2e-29 seq195 111 1e-19 seq19263 95.1 9e-15 seq21550 91.5 1e-13 seq12187 86.0 5e-12 >seq8895 Length=8815 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||| | ||||| || ||||||||||| ||||| ||||| || Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||||||||| || ||||||||||||| || || || || Sbjct 746 AGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGG 687 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||| | ||||| | || | |||||||||| ||||| Sbjct 686 ATTCCTTCTTTGTCTTG-AATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTAC 628 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | ||||| ||||| |||||||| Sbjct 627 CTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq195 Length=29407 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || ||||||| ||| | ||| | || ||||||||||| || || ||||| | | Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | || || | |||||| || ||| | ||||||| ||| || || || || Sbjct 27163 AATGTT-CTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGG 27105 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || | ||| || || | |||| || || ||| ||| || Sbjct 27104 CATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAAC 27045 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| || ||||| ||||| | |||||| ||||| Sbjct 27044 GTCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq19263 Length=3464 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || ||||| || || |||||||||||||| || |||| ||| || | Sbjct 2720 CGAAGTACCAAGTGCAGCGTTGACTCCTTTTGAATGTTATAGTCAGCAAGGGTACGTCCA 2779 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| || ||| | ||||||| ||||| || || ||||| ||||| || Sbjct 2780 TCCTCAAGTTGTTTACCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCCTTA 2839 Query 29692 TCTTG 29696 || || Sbjct 2840 TCCTG 2844 >seq21550 Length=3044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| || || ||||| || ||||| ||||| || || || | ||||| | Sbjct 2653 CGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCA 2594 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| ||| ||||| ||||| || || ||||||||| Sbjct 2593 TCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTG 2534 Query 29692 TCTTGTAATTTT 29703 || || |||||| Sbjct 2533 TCCTG-AATTTT 2523 >seq12187 Length=9842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||||||||| || |||||||| || || || || || || ||||| Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || || ||| | ||||| | ||||| || || || Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || ||| || | || || | || | |||||| || || || Sbjct 9740 ATGCCCTCCTTATCCTG-AATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCAC 9798 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCT 29782 || || || || || || || || | |||||| || || |||| Sbjct 9799 CTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385030264789263