Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq195 100 4e-16 >seq195 Length=29407 Score = 100 bits (110), Expect = 4e-16 Identities = 167/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 193772 TGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACA 193831 ||||||| ||| ||| ||| || |||||||| || || || || || ||||| ||||| Sbjct 3979 TGGTAAATTAATGGAAGGTAATATCTTTATAGGACCTACATACTACCAACGTCTGAAACA 4038 Query 193832 TATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTGACTACTTTACATCGACA 193891 |||||| | |||||||| ||| || ||| | | || | || | |||| |||||| Sbjct 4039 TATGGTGGATGATAAAATCCATTCTCGAAATAAAGGCCCTTTGCAAATTTTAACTCGACA 4098 Query 193892 ACCAAATTGT----GGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAG 193947 ||| ||| || || | | | ||| |||||| | ||||||||||||||| | Sbjct 4099 ACC----TGTCGAAGGACGCACACGCGATGGTGGTTTACGCTTTGGAGAAATGGAGCGCG 4154 Query 193948 ACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTG 194007 | ||| | || ||||| ||| | || || || || ||| | ||||||| |||| | Sbjct 4155 ATTGTGTCATATCACATGGAGCTTCACATTTTTTAAAAGAACGTTTGTTTTTACATTCAG 4214 Query 194008 A 194008 | Sbjct 4215 A 4215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634858081848040