Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq195 104 3e-17 >seq195 Length=29407 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 201913 AAAGTAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATA 201972 || |||| || |||||||| || |||||||| || ||||| ||||||||||| | |||| Sbjct 3993 AAGGTAATATCTTTATAGGACCTACATACTACCAACGTCTGAAACATATGGTGGATGATA 4052 Query 201973 AAATGCATGCGAGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTC 202032 |||| ||| | ||| | | || | | || ||| ||| ||||| | || | Sbjct 4053 AAATCCATTCTCGAAATAAAGGCCCTTTGCAAATTTTAACTCGACAACCTGTCGAAGGAC 4112 Query 202033 GGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATG 202092 | | | | |||||| ||| | |||||||||||||| |||||| | | |||| Sbjct 4113 GCACACGCGATGGTGGTTTACGCTTTGGAGAAATGGAGCGCGATTGTGTCATATCACATG 4172 Query 202093 GGGCCACACAATTTTTAAATGAAAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATG 202152 | || |||| |||||||| ||| | ||||||| ||||||| | | | | | | | Sbjct 4173 GAGCTTCACATTTTTTAAAAGAACGTTTGTTTTTACATTCAGACGCATATAGAGTTCACG 4232 Query 202153 TGTGTACAAATTGTGGAATGAT 202174 | ||| ||| |||||||| || Sbjct 4233 TTTGTTCAATCTGTGGAATTAT 4254 Score = 100 bits (110), Expect = 4e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 52914 aaaaaaTTCAACTTGA-TATTGGAGACATAGTCAAAAGACAACTAAGAAATGGAGATTGG 52972 |||||||| || || | ||| ||||| | || |||||||| | | | |||||||| Sbjct 10571 AAAAAATTAAAATTAAATATAGGAGATACTGTAGAAAGACAAATTAAAGATGGAGATGTA 10630 Query 52973 GTTCTATTAAATCGTCAACCAACATTACATAAACCTTCCATGCAAGCATTTATCGTAGTT 53032 ||| | |||| | | ||||| | ||||| ||| |||||| | | || ||| Sbjct 10631 GTTGTTTTAA-TAGACAACCGTCGTTACACAAAATGTCCATGATGGGACATAAAGTAAAA 10689 Query 53033 ATTATTGATGGTAAAACTTTAAGGATGAATTTAGCTATGGCTAAAGCTTACAATGCAGAT 53092 || | || || || || || | |||||||| || | ||| |||||||||||||| Sbjct 10690 GTTGTCGAAGGAAATACGTTTAAATTGAATTTATCTGCGACTACTCCTTACAATGCAGAT 10749 Query 53093 TTTGATGGAGATGAAATGAATTTACATATTCC 53124 |||||||| |||||||||||| | |||||||| Sbjct 10750 TTTGATGGCGATGAAATGAATATGCATATTCC 10781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654950369587000