Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq195 100 4e-16 >seq195 Length=29407 Score = 100 bits (110), Expect = 4e-16 Identities = 167/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 193325 TGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACA 193384 ||||||| ||| ||| ||| || |||||||| || || || ||||| ||||| ||||| Sbjct 3979 TGGTAAATTAATGGAAGGTAATATCTTTATAGGACCTACATACTACCAACGTCTGAAACA 4038 Query 193385 CATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACTTTACATCGACA 193444 ||||| | |||||||| ||| || ||| | | || | || | |||| |||||| Sbjct 4039 TATGGTGGATGATAAAATCCATTCTCGAAATAAAGGCCCTTTGCAAATTTTAACTCGACA 4098 Query 193445 ACCAAATTGT----GGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 193500 ||| ||| || || | | | ||| |||||| | |||||||||||||| | Sbjct 4099 ACC----TGTCGAAGGACGCACACGCGATGGTGGTTTACGCTTTGGAGAAATGGAGCGCG 4154 Query 193501 ACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATTCTG 193560 | ||| | || ||||| ||| | || || ||||| ||| | ||||||| |||| | Sbjct 4155 ATTGTGTCATATCACATGGAGCTTCACATTTTTTAAAAGAACGTTTGTTTTTACATTCAG 4214 Query 193561 A 193561 | Sbjct 4215 A 4215 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 |||||||| | | |||||| |||| || | |||| ||| ||||| | | || ||| Sbjct 10605 AAAGACAAATTAAAGATGGAGATGTAGTTGTTTTAA-TAGACAACCGTCGTTACACAAAA 10663 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425 || ||| | |||||| ||| || || ||| || |||||| |||||||| Sbjct 10664 TGTCCATGATGGGACATAAAGTAAAAGTTGTCGAAGGAAATACGTTTAAATTGAATTTAT 10723 Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCC 50483 || ||||| | || ||||| ||||||||||| |||||||||||| | ||| |||| Sbjct 10724 CTGCGACTACTCCTTACAATGCAGATTTTGATGGCGATGAAATGAATATGCATATTCC 10781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628215025236480