Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4024 145 6e-29 seq39397 105 5e-17 seq195 86.0 5e-11 >seq4024 Length=17207 Score = 145 bits (160), Expect = 6e-29 Identities = 454/701 (65%), Gaps = 3/701 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || || || || || |||||||||||||| | ||| | || | |||||| | || Sbjct 6115 ACGAGGCGGTTGTCGAAGTCTTCACCTCCCAAGTGAGTGTCACCCGCAGTAGCTTTCACC 6174 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||||| || || || | || ||||||| || ||| || || || || | || Sbjct 6175 TCGAAAATGCCCTCCTCGATAGTTAAAAGAGAGACGTCAAAAGTGCCGCCGCCAAGGTCG 6234 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || | || || | || || ||||| || ||||| | ||| ||| Sbjct 6235 AAGATGAGGATGTTGCGCTCACCCCCAGCCTTCTTGTCAAGGCCGTACGCGATAGCCGCA 6294 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || ||||| || | ||| ||||| |||||||| |||| || ||| Sbjct 6295 GCCGTGGGCTCGTTAATGATACGCAAGCAGTTAAGTCCAGCAATGGAAGCTGCGTCCTTA 6354 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || |||| || || || || ||||| || |||||||| | || |||| | ||| Sbjct 6355 GTCGCCTGTCGCTGGGAGTCATTGAAATACGCCGGAACAGTCACCACCGCATTATTGACT 6414 Query 282482 TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 || || || | | || ||| | ||||| || || | ||| || |||| Sbjct 6415 TCCTTCCCGAGGAAGGCTTCTGCCACCTCCTTCATCTTCACTAGCACCATAGAGGAAACC 6474 Query 282542 TGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAA-ATATGGTTTATT 282600 | || | |||| || ||| ||| | |||| ||||| | ||| | ||| Sbjct 6475 TCCTCAGCAGAAAATATCTTTTTCTCACCCTTATATTCAACTTCGAGCATAGGCTTTTCG 6534 Query 282601 ACCAA--CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCA 282658 || || | || ||| |||||| || ||||| |||||| || Sbjct 6535 GCCTCTCCAGACTTCACGCCAAAAGGCCAAAGCTTGATATCACTTTGAACGGCAGAATCG 6594 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 || | | |||||| | || || ||||| || || |||||| | || || | ||| Sbjct 6595 GAGAACTTGCGACCAATGAGGCGCTTGGCATCGAAGATGGTATTGCTGGGGTTCATCGCA 6654 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 |||| | ||| |||||||| |||||||| | || || || || || | ||||| || Sbjct 6655 ACTTGGTTTTTCGCTGCATCGCCAATCAGGCGCTCGGTGTCAGTGAACGCCACATAAGAA 6714 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 || || ||||| || || |||||||| |||||||| || || |||||||||| ||| Sbjct 6715 GGCGTGGTGCGGTTGCCCTGATCATTTGCAATAATCTCCACACGGTCATTTTGCCACACA 6774 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 |||||||| | || || || | || ||||||||||| Sbjct 6775 CCTACACAGGAGTACGTGGTGCCGAGGTCGATACCAATAGC 6815 >seq39397 Length=5929 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 || || || || ||||| ||| | || | ||||| |||| |||||| || ||||||||| Sbjct 1082 TTTGCGGCGTCGCCAATGAGACGCTCGGAGTCTGTGAATGCAACATAGGAGGGAGTTGTG 1141 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 || || || ||||| || ||||| || || || | |||||||||| |||||||| ||| Sbjct 1142 CGGTTTCCCTGATCGTTAGCAATGATCTCCACGCGATCATTTTGCCACACACCTACGCAA 1201 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | || ||||| | ||| ||||| |||||| Sbjct 1202 GAGTAGGTAGTTCCGAGATCGATACCGATAGCA 1234 >seq195 Length=29407 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 |||||||||||| || | ||||| ||| || |||||||||||| |||| ||||||||||| Sbjct 11726 TGAATTTTTCTTTCATGCAATGGGTGGACGAGAAGGTATTATTGATACCGCTATTAAAAC 11785 Query 435192 TGCTGATACTGGTTATATTCAA 435213 | | || || || ||||| ||| Sbjct 11786 TTCGGAAACCGGATATATACAA 11807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738654638766918