Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12187 132 5e-26 seq7861 132 5e-26 seq26458 95.1 1e-14 seq37070 93.3 4e-14 seq1570 93.3 4e-14 seq1 89.7 5e-13 seq13311 87.8 2e-12 seq18016 86.0 6e-12 >seq12187 Length=9842 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| |||||||| || ||| ||| | |||||| |||||||| || Sbjct 9650 GTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCG 9709 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | |||||||||||||||||||||||| ||||| || ||||| ||| Sbjct 9710 GCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTGGCCTTC 9769 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | |||||| || | |||| ||| || ||||| || ||| Sbjct 9770 ACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTT 9829 Query 133644 TTTACGAAAATCT 133656 |||||||| |||| Sbjct 9830 TTTACGAAGATCT 9842 >seq7861 Length=6948 Score = 132 bits (146), Expect = 5e-26 Identities = 244/355 (69%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT--- 148103 ||||| |||||||||||||||||| || || | |||||| | ||| || | |||| Sbjct 2661 TTAAAGCTCTGGCTCTGGTCAATGAAGGCACCTCTGTCAGCAGACATGTCTACGAGTGTT 2720 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| | || || ||||| | ||||||||||| || || | | |||||| ||| Sbjct 2721 CGCTGT---TTGATTTCCCACACTGTCTTGTACAGACGTTTAAGGTCATCGGGGATGTTA 2777 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAA---AATCTGATTGCGCATTTCGTCCGTG 148220 |||| |||||| |||| |||||| | ||| | || ||| || | | Sbjct 2778 GGGATGTTCTGCACGCTGCCGTTGTGCGCGATTAGAATGTTCTT---CATGTCTGCATTC 2834 Query 148221 TATAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCG 148280 | ||| || || ||| ||| | || || | ||| |||||||| ||||||||| Sbjct 2835 CAAAGGCCTAGGTCTGTCAAGTCGTTGAGCAAGTGCTGGTTCACCACGGTGAACTCGCCG 2894 Query 148281 GCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCC 148340 ||||| | ||| ||| | |||||| || | || || || |||||||||||||| Sbjct 2895 CTCAGCACCCTCCGGGCATAGATGTTGCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCC 2954 Query 148341 AAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCA 148395 | ||||||| ||| | |||||||||||| || || || || |||||||||| Sbjct 2955 AGGATCTGCGAGGTGGAGGCCGTGGGCATGGGAGCCACGAGGAGGGAGTTGCGCA 3009 >seq26458 Length=3991 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/99 (83%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| || | | |||| ||| |||||| || ||||| || Sbjct 2064 GTGGACTCCTTCTGGATATTGTAGTCAGCGAGCGTGCGACC-GTCCTCCAGTTGCTTCCC 2006 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTC 133561 |||| |||| || ||||||||||||||||||||||| || Sbjct 2005 CGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATGCCCTC 1967 >seq37070 Length=1165 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/160 (74%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 133508 CTCGAGCTGCTT---GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGC---CTTC 133561 ||| |||||||| ||||||| |||| || |||||||||| ||||||||| | | || Sbjct 614 CTCCAGCTGCTTCCGGCCCGCGAAAATAAGGCGCTGCTGGTTGGGAGGGATACGAGCCTC 555 Query 133562 CTTGTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGG 133620 ||| || |||| | || || |||| || | ||||| | | ||||| |||| || Sbjct 554 CTTCTCC-TGATTCGTGGCCTTCAGCTTGTCTATTGTGTCAGAGCTTTCCACCTCGAAGG 496 Query 133621 TGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||| ||||| ||||||||||| || || ||||| Sbjct 495 TGATGGGTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 456 >seq1570 Length=19022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || || || ||||| ||| |||||||||| || ||||||||||| |||| | Sbjct 12067 AGGCAAGCGAAATCGCGGTGCATGCCTTCGTCGCGCGCGATGAGCTCGTTGCTGAACGAC 12126 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||| | || | | | || ||||| || |||||| ||| ||| | || || Sbjct 12127 AGACCGGGCATCAGCCCCTGCTTTTTCATGTAAAAGATGGCGCAAAAACTGGCGGAGAAA 12186 Query 120760 AACACGCCCTCCACGATGGCAAAGGC 120785 || | |||||| ||| ||||| || Sbjct 12187 AATATGCCCTCGACGCACGCAAAAGC 12212 >seq1 Length=211102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||||||||| || ||||| ||| ||||| |||| || |||||||| || |||| Sbjct 114667 CAGGCACGCAAAATCGTGGTGCATGCCTTCGTCACGCGCGATAAGCTCGTTACTGAACGA 114726 Query 120699 CAGGCCGGGCAT-GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCG-AA 120756 || |||||||| | | | | | || || |||||||| |||||| |||| ||| | | || Sbjct 114727 TAGACCGGGCATCGGTCCTTGTTGT-TTCATGTAGAACATGGCGTCAAACCTGGCAGAAA 114785 Query 120757 AAGAACACGCCCTCCACG 120774 ||||| | ||| || ||| Sbjct 114786 AAGAAGATGCCTTCGACG 114803 >seq13311 Length=4779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| |||||||| || ||| ||| |||||||||| Sbjct 4640 AAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGC 4699 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||||||||||| | || || ||||||||||| || || || || |||||||| Sbjct 4700 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 4752 >seq18016 Length=3756 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| || || |||||||| || | | ||| ||| ||||||||| Sbjct 112 AAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCGAGAGTGCGACC-GTCCTCGAG 170 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCC 133562 ||||||||||||| | ||||| ||||||||||| || || || ||| || Sbjct 171 CTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTGCC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483177621209320