Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3475 111 4e-19 seq195 102 2e-16 seq188 93.3 1e-13 seq19523 86.0 1e-11 >seq3475 Length=17180 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 97435 AAGGTATACACGCGAGAGAAGATCACCATTACGAGAAACAGTGCATGTCACGCGCTTGCC 97494 |||||| ||| || | ||||||||||| ||| | ||| || | || || || Sbjct 1610 AAGGTACACATTTGAAATGAGATCACCATTGCGACTGATGGTGGTCGTTAATCGATTACC 1551 Query 97495 GAAGTCAGCAGAGCCGTTGAAGGTCTGCTCGATGGATTCCATCGAGAAGTTCGTGTGGCG 97554 | | | | ||||||| |||||| || || |||||||| | ||||| |||||||| Sbjct 1550 GGGTTTCACCGTACCGTTGATGGTCTGTTCAATAGATTCCATGGCAAAGTTGGTGTGGCG 1491 Query 97555 TCTGTAAACAATTTTGAAGAAAGTAATCTGAGGATTGCCGGTAAGGTATATATCTTGCGC 97614 | || || | |||||| |||| || | ||| || || || | | | | |||||| || Sbjct 1490 GCGATAGACCACTTTGAAAAAAGAGATTTCAGGCTTACCTGTTAAGAAGACATCTTGAGC 1431 Query 97615 GCCATACGCGACGAGCTGCATTAAACCACCACCCATTTTTTGGTATA-ACTATAC 97668 ||||| ||||| || |||||||| || ||||||| | |||| |||| ||||||| Sbjct 1430 ACCATAAGCGACAAGTTGCATTAATCCTCCACCCA-TGTTTGTTATATACTATAC 1377 >seq195 Length=29407 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| ||||| || | || |||||||| ||||||| |||||||| ||||| | Sbjct 10636 TTTAATAGACAACCGTCGTTACACAAAATGTCCATGATGGGACATAAAGTAAAAGTTGTC 10695 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 ||| || ||| ||| ||| || ||| ||| ||||| ||||| ||||||||| Sbjct 10696 GAAGGAAATACGTTTAAATTGAATTTATCTGCGACTACTCCTTACAATGCAGATTTTGAT 10755 Query 305456 GGAGATGAAATGAATATGCAT 305476 || |||||||||||||||||| Sbjct 10756 GGCGATGAAATGAATATGCAT 10776 Score = 96.9 bits (106), Expect = 8e-15 Identities = 202/300 (67%), Gaps = 7/300 (2%) Strand=Plus/Plus Query 306151 AGGTTCAAAAGGCAAATTAATTAATATTGCTCAGATCACAGCCCTATTAGGACAGCAAGT 306210 |||||||||||| || | |||||||| | || |||| ||| | || || ||| Sbjct 11540 AGGTTCAAAAGGAAACGTTATTAATATATCACAAATCATGGCCTGTGTCGGTCAACAAAA 11599 Query 306211 TATCGATGGAGATCGAATTGAATGTCTAATTG--ATACGAATAGAACATTACCATTATTT 306268 | | ||||| |||| || | || || | ||| ||||||||||||||| || Sbjct 11600 TGTAAATGGAAATCGGATAGGAT-----ATGGGTATAACAATAGAACATTACCACATTTC 11654 Query 306269 AGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATATCAAGTTCATTTAAACAAGGA 306328 ||||||| |||| | || ||| ||||| || | ||| | | ||||||| Sbjct 11655 CCTAAATTTTCAAATGATGCCGAAAGTCGAGGATTTGTAGAACATTCGTATTTACAAGGA 11714 Query 306329 CTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGGACGTGACGGTGTTATTGATACT 306388 || ||| ||||||| |||||||||||||| | ||||| || ||| |||||||||| Sbjct 11715 TTAAATCCGTCTGAATTTTTCTTTCATGCAATGGGTGGACGAGAAGGTATTATTGATACC 11774 Query 306389 GCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAAATTAATGAAAACGCTTGAAGAT 306448 ||| ||| || | | || ||| | ||| | | ||| || ||| || | |||||| Sbjct 11775 GCTATTAAAACTTCGGAAACCGGATATATACAACGTAGATTGATTAAAGCGATGGAAGAT 11834 >seq188 Length=36365 Score = 93.3 bits (102), Expect = 1e-13 Identities = 208/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 129794 CATCTTTTCTTTCTAAAGTTGCACTTAATCCTAAATTAAATTTTGAAGAACATTTTGTAA 129853 ||||||||| ||| | || || ||| ||||| | |||||| || || || || Sbjct 2781 CATCTTTTCGTTCAAGTGTAGCCGATAAGCCTAATACATATTTTGTTGAT-ATCTTAAAA 2723 Query 129854 ATGCTATT-GAAAATATATTAGCTGATAAGTGATGTGTTTCGTCAAATACTGTGATACCA 129912 | |||| ||||| | ||| ||| ||||||||||| || | | || | |||| Sbjct 2722 AAAATATTTGAAAACACTCTAGTACATATATGATGTGTTTCATCTATAATAGTAAAACCA 2663 Query 129913 AAAGTATCAAATGAATTCTTCTCAAAATCtttttttGAAACGGTTTGTAACATTGCAATT 129972 || ||| ||| | || ||| | |||||| | | |||| ||| ||||||||||| Sbjct 2662 AATCCATCGAATATACTCGAATCATATTCTTTTATACATACGGATTGCAACATTGCAATA 2603 Query 129973 ACTATATCACAATTTTCA---ATATCAAACTTTTGCCCTTGAATCTTACCTATTTTCGCA 130029 || ||||| ||| || | ||| | | | |||||||| || || |||| ||| Sbjct 2602 ACAATATC---TTTTCCAACTACATCGACAGTCTTTCCTTGAATTTTTCCGATTTCTGCA 2546 Query 130030 TTAGGTAGAAATTGATTAATCCTATCAATCCATTGA-TCAGCTAAAAACTGCTTGTGAAC 130088 || || | |||||| || ||| | || ||||||||| ||| | ||||||| ||||| || Sbjct 2545 TTTGGCAAAAATTGTTTTATCTTTTCTATCCATTGATTCATC-AAAAACTCTTTGTGTAC 2487 Query 130089 CACAAT 130094 | ||| Sbjct 2486 AAAAAT 2481 >seq19523 Length=3369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 187/280 (67%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 121346 CCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGA 121405 || |||||||| ||||| || || || | || || || ||||| ||||||| || || Sbjct 575 CCGGAAATCATGTTCTTGATGAAATCCCTGTGACCGGGAGCATCGATAATAGTGTAGTGC 516 Query 121406 TAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCT 121465 | || ||||| || ||||| || | ||| | || | || ||||||||||| Sbjct 515 CAGTTGTCCGTGTAGAACTCCTTGGTGGTGCAAGAGATGGTCACACCACGCTCACGCTCC 456 Query 121466 TCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCA 121525 ||||| | | |||||||| ||||||| || ||| ||| ||||| || ||||| Sbjct 455 TCCTTTTGCCTGTCCATGTAGAAAGCAAAGGCGAAAGAAGACTTGCCCAGGGCATCGGCC 396 Query 121526 AGTTCCTGCAACTTCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGA 121585 ||| | |||| | | |||||| | || || || | | || | | || Sbjct 395 TCAGCCTTGAGCTTCTCAAGCTCACGCTCGGGGATACCACCGAGCTCGAATAACAAGCGA 336 Query 121586 CCGGTTGTTGTTGACTTTCCCGAGTCAACTTCACCACAGA 121625 ||||| || || |||||||| ||||| || | ||| |||| Sbjct 335 CCGGTGGTAGTCGACTTTCCGGAGTCGACATGACCGCAGA 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186200863372523