Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8895 138 3e-27 seq21550 100 7e-16 >seq8895 Length=8815 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || || || || ||||| ||||| || || ||||||||| Sbjct 583 CAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCTGAC 642 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || |||||||| ||||||||||| || ||| ||| Sbjct 643 ACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAACAA 702 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || ||||| || || || ||||||| || |||| |||| ||||||||| || Sbjct 703 AGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAACATC 762 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||| |||||||||||||| || Sbjct 763 CAAAAAGAATCTACTCTTCACCTCGT 788 >seq21550 Length=3044 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||||||||| ||| | |||||| | || Sbjct 2453 CAAGACACTCACCGGAAAGACCATCACTTTGGACGTGTGTCCTAGTGACACGATTGAGGA 2512 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||||| || ||||| || || |||||| || ||||| ||||| Sbjct 2513 GTTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCCCCGGACCAGCAGAGACTGATCTT 2572 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| |||| ||||| | || |||| || |||||| |||| || ||||| Sbjct 2573 TGCGGGAAAGCAGCTGGAGGATGGGCGCACACTGGCAGACTACAACATCCAAAAGGAGTC 2632 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2633 CACCCTGCACCTGGT 2647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181211437314803