Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7861 129 6e-25 seq1 100 3e-16 seq1570 96.9 3e-15 >seq7861 Length=6948 Score = 129 bits (142), Expect = 6e-25 Identities = 284/425 (67%), Gaps = 3/425 (1%) Strand=Plus/Plus Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC---CTGGTCG 147948 |||||||| ||||||| ||||| ||| | ||||| || |||||||| || ||| ||| Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 |||| ||| | ||| ||| || || || | ||| || | | |||| ||| || ||| Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| || | || | | | || | | || | ||| | ||| || || Sbjct 4752 TTGGTGCCCCGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCCCT 4811 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| || |||||| || ||||| || || || || |||||| || ||||| ||| Sbjct 4812 CCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATACTG 4871 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 |||| ||| | ||| ||| || || | || || || |||| || || | Sbjct 4872 TCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGTTG 4931 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || || || || |||||| || ||| | | ||||| | | | || |||| ||| Sbjct 4932 AAGAGCGTAGGTGACGCGTGTGTGAACCAACGCTCGCTCATAAGGTGGTATGTCTTGATA 4991 Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 || | ||||||| || ||||||||||| ||||| ||||| ||||||||||| || Sbjct 4992 GCTTGCTCGATGTTCTCTTGGTGAATGCCCACGGCGACCCGCATAAGCATGTGCTGAGGA 5051 Query 148309 CGTTC 148313 ||||| Sbjct 5052 CGTTC 5056 >seq1 Length=211102 Score = 100 bits (110), Expect = 3e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 46834 TGGTGGCATTCGCGATAGTCGAAGGCGTGtt-tttttCGGGCAGTTTTGCCGCCATTTTT 46892 || ||||||||||| ||||||||| | || |||||| | ||| |||| |||||| || Sbjct 114819 TGTTGGCATTCGCGTGCGTCGAAGGCATCTTCTTTTTCTGCCAGGTTTGACGCCATGTTC 114760 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 ||||| ||| |||| ||||| || || |||||||||||||| | ||| |||| Sbjct 114759 TACATGAAACAACAAGGACCGATGCCCGGTCTATCGTTCAGTAACGAGCTTATCGCGCGT 114700 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||| | ||| || |||||||| || Sbjct 114699 GACGAAGGCATGCACCACGATTTTGCGTGCCT 114668 >seq1570 Length=19022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46834 TGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTT 46893 || |||| || ||| ||||| ||| | ||||| || | ||||||| |||||| |||| Sbjct 12217 TGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTTT 12158 Query 46894 ACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 |||| |||| | || | ||||| || ||| ||||||| |||||| | ||| |||||| Sbjct 12157 ACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGCG 12098 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTCT 46986 ||||||| | ||| || || || || |||| Sbjct 12097 ACGAAGGCATGCACCGCGATTTCGCTTGCCTCT 12065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476371446693480