Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq8895 87.8 1e-12 seq195 84.2 2e-11 >seq8895 Length=8815 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | ||||| |||||||| ||| |||| ||| Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | | || || |||||| ||||||||||| | || ||| ||| Sbjct 640 GACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAA 699 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | |||||||||||| | ||||| || ||| ||||||||| Sbjct 700 CAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAAC 759 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||||||||| || || Sbjct 760 ATCCAAAAAGAATCTACTCTTCA 782 >seq195 Length=29407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 || || ||||| |||| || |||||| | | |||| ||| || |||||||| ||| Sbjct 27090 GATAAGGAAGGAATGCCACCCGACCAACAACGATTGATTTTTGCAGGAAAACAATTGGAA 27149 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || | ||| |||| |||||||| |||||||||||||| || ||||| | || ||| Sbjct 27150 GACGGGAGAACATTGGGTGATTACAATATACAAAAAGAATCAACCTTACATCTCGTGTTG 27209 Query 106473 AGGTTACGAGGAGG 106486 | ||| ||||||| Sbjct 27210 CGTTTAAGAGGAGG 27223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402132272795744