Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18178 122 1e-21 seq7861 122 1e-21 seq6362 105 1e-16 seq27800 102 1e-15 seq13257 102 1e-15 seq31585 98.7 1e-14 seq4459 95.1 2e-13 seq1570 91.5 2e-12 >seq18178 Length=3647 Score = 122 bits (134), Expect = 1e-21 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||||||||| || ||| |||| || | |||| || Sbjct 2750 ATCTACAAGGTGCTCAAGCAGGTGCACCCTGACAC---TGG--CATC-TCAAGCAAGGCC 2697 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||| || |||| || | ||| | | Sbjct 2696 ATGAGCATCATGAACTCTTTCATCAACGATATTTTCGAGAAGATTGCTGGTGAGTCTGCC 2637 Query 725031 CGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || ||| | | ||||||| || | || ||| | || ||||| ||||||| ||| Sbjct 2636 AAGCTTGCGAGGTACAACAAGAAGCCA-ACCATCACGTCCCGTGAGATTCAGACCGGCGT 2578 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||| ||| ||||||||| |||| |||||| || || |||||||||| Sbjct 2577 GCGCCTGATCCTGCCCGGCGAACTCGCCAAGCACGCTGTGTCTGAGGGCACCA 2525 >seq7861 Length=6948 Score = 122 bits (134), Expect = 1e-21 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| |||||||||| | |||||||| | ||||||||||||| | || ||||||| Sbjct 3018 AGCACGGCGTGCGCAACTCCCTCCTCGTGGCTCCCATGCCCACGGCCTCCACCTCGCAGA 2959 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||||||||||| |||| |||||| ||| ||||||||||| | || | |||| Sbjct 2958 TCCTGGGCAACAACGAGTGCTTCGAGCCTTACACAAGCAACATCTATGCCCGGAGGGTGC 2899 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAA 263072 | ||||| || |||||||| |||| ||| || |||| Sbjct 2898 TGAGCGGCGAGTTCACCGTGGTGAACCAGCACTTGCTCAA 2859 >seq6362 Length=12758 Score = 105 bits (116), Expect = 1e-16 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||||||||| || |||| ||| |||| |||| | Sbjct 5017 ATCTACAAGGTGCTCAAGCAGGTGCACCCTGACAC---TGGG--ATC-TCCAGCAAGGCT 4964 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||| || |||| |||| ||| | | Sbjct 4963 ATGAGTATCATGAACTCTTTCATCAACGATATTTTCGAGAAGATCGCTGGTGAGTCTGCC 4904 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 |||||| | | ||||||| || ||| | ||| || || || ||||||| Sbjct 4903 AAGCTGGCGAGGTACAACAAG---AAGCCGACCATCACTTCCCGTGAAATTCAGACCGGT 4847 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| ||| |||||| || || | ||| || || || |||||||||| Sbjct 4846 GTGCGCCTGATCCTGCCCGGCGAGCTCGCGAAGCATGCGGTGTCTGAGGGCACCA 4792 >seq27800 Length=2063 Score = 102 bits (112), Expect = 1e-15 Identities = 277/414 (67%), Gaps = 24/414 (6%) Strand=Plus/Plus Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 ||||||||| | || || ||||||| |||||||| |||| |||||| | |||| Sbjct 191 TTTTTCGCCTCGGCGGACAGCGTCGTGGCGGAGAACCTCGCCGTTCGCTTTTTACGAGAG 250 Query 1455967 GTCCA-ATTGCCAGAGGCACGTT-TGTTT-TACGGGTTCCAGATCGCCATCGAAAACATC 1456023 | | || || | ||| || || ||||| | |||| |||| ||||| ||||| Sbjct 251 GACGGCATCAGCATGGAGACGGCGTGCTTCTACGGATACCAGGTCGCGATCGAGAACATT 310 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGAC 1456083 ||||| || | ||| ||| | || ||| || | |||||||||| ||||| | Sbjct 311 CACTCCGAGATGTACAGCCTCTTCATAGACGCCCTCATCAAGGACCCTAAACAGAAGCAG 370 Query 1456084 CACCTCTTTCGCGCCATCGACA--CGGTGC-----CGTCGGTGAGGAAAAAGGCCGACTG 1456136 | ||| || ||||| | ||| || ||||| ||| ||| ||| ||| Sbjct 371 GAGACCTT---CGACATCGCCGAGCGGAGCGAGAGCGTCGCGGAGAAAA----CCGCCTG 423 Query 1456137 GGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTT 1456196 |||| | || || ||| || | | | | ||| | || || ||| || Sbjct 424 GGCGGTTCGGTACGTCGACAGCGAAGA----GTCTTTCTGC-GCTCGTCTTCTCGCTTTC 478 Query 1456197 GCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAG 1456255 || |||| ||||||||||| ||||| | ||||||||||| ||||||||| | |||||| Sbjct 479 GCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGCGCTATCTTTTGGTTGAAGAAG 538 Query 1456256 CGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || ||||| || | || ||| |||||||| | ||| ||||||||| Sbjct 539 CGCGGACTGATGCCGGGGC-TCGCCTTCAGCAACGAGCTCATCGCTCGCGACGA 591 >seq13257 Length=7581 Score = 102 bits (112), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||||||||| |||| ||| || | |||| || Sbjct 5602 ATCTACAAGGTGCTCAAGCAGGTGCACCCGGACACCGGA-----ATC-TCTAGCAAGGCC 5655 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||| || |||| |||| ||| | | | Sbjct 5656 ATGAGCATCATGAACTCTTTCATCAACGATATTTTCGAGAAGATCGCTGGTGAGTCTGCT 5715 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || ||| | | ||||||| || ||| | ||| || ||||| ||||||| Sbjct 5716 AAGCTTGCGAGGTACAACAAG---AAGCCGACCATTACGTCCCGTGAGATTCAGACCGGT 5772 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||||||||| ||| |||||| || || | |||||| || || |||||||| Sbjct 5773 GTGCGCCTGATTCTGCCCGGCGAGCTCGCGAAGCACGCAGTGTCTGAGGGCAC 5825 >seq31585 Length=2995 Score = 98.7 bits (108), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||||||||| || | | ||| || | |||| | Sbjct 64 ATCTACAAGGTGCTCAAGCAGGTGCACCCTGACACTGGT-----ATC-TCTAGCAAGGCT 117 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||| || |||| |||| | ||| | | | Sbjct 118 ATGAGCATCATGAACTCTTTCATCAACGATATTTTCGAGAAGATCGCCGGTGAGTCTGCT 177 Query 725031 CGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| | | ||| ||| || | || ||| | || ||||| ||||||| || Sbjct 178 AAGTTGGCGAGGTACAATAAGAAGCCA-ACCATCACTTCCCGTGAGATTCAGACCGGTGT 236 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| ||| ||||| || || | ||| || || ||||||||||||| Sbjct 237 TCGCCTGATCCTGCCTGGCGAGCTCGCAAAGCATGCGGTGTCCGAGGGCACCA 289 >seq4459 Length=9375 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1456200 GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259 |||| ||||||||||||||||||| |||||||| ||||| || | ||| || ||||| | Sbjct 2086 GCGTGGAGGGCATCTTTTTCTCGGCGAGTTTCTGTGCCATATTCTTGCTGAAAAAGCGGG 2145 Query 1456260 GCCTCATGCCCGGTCTTCTGCTTT-AGCAACGAATTTATCAGTCGCGACGAAG 1456311 | | |||||||| || ||||| |||||||| ||||| ||| ||||||| Sbjct 2146 GATTGATGCCCGGACT--AGCTTTCAGCAACGAGCTTATCGCTCGTGACGAAG 2196 >seq1570 Length=19022 Score = 91.5 bits (100), Expect = 2e-12 Identities = 334/512 (65%), Gaps = 27/512 (5%) Strand=Plus/Minus Query 1455812 TTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 |||||||||||| ||||| || | ||| ||| | || |||| || ||| Sbjct 12588 TTGGACCGCCGAAGAGGTGGATTTGAGCGAAGACTTGAAACATTGGGAAGCGTTGACTCC 12529 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || |||| || || | ||| ||| | || |||||||||| || ||| |||||| Sbjct 12528 GGATCAGCGTCAGTTTTTGAAGACCGTGTTAGC-TTTTTTCGCCTCCGCGGATAGCATCG 12470 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG-CCAG-----AGGCAC 1455985 | || || ||||| || ||||||||| || || | | |||| |||| Sbjct 12469 TCGCGGAAAACCTCGCTCAGCGCTTTATGCGCGA---CCGAGAGACCAGCATGGAGGCTT 12413 Query 1455986 GTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCC 1456045 || |||||||| || |||||| ||||| ||| | || || ||| ||| | Sbjct 12412 TCTTTTTTTACGGTTTTCAGATCATGATCGAGAACGTTCATTCCGAAGTGTACAGTATTT 12353 Query 1456046 TGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCG-AC 1456104 | ||||| ||| ||||||| ||| |||||| | | ||| || | | || || Sbjct 12352 TCATCGAATCCTTAATCAAGGATCCGCAAGAGAAGAAGGAGACCTT-CGAGGCGGCGCAC 12294 Query 1456105 ACGGTGCCGTCGGTGA---GGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG 1456161 ||| ||| |||| |||||| || | |||||| | || ||| | | || Sbjct 12293 ACGAATTCGTGCGTGAAGCGGAAAACGG---AATGGGCGCAGCGGTACATCGAAAGCCAG 12237 Query 1456162 GGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG--CGTCGAGGGCATCTTTTTC 1456219 || | ||| || | || | || |||||| || |||||||||||| |||||| Sbjct 12236 AGCAGC-----TTTTCCACGAGGTT-GTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTC 12183 Query 1456220 TCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTG 1456279 || | |||||| ||||||||||||| | || |||| || || |||||||||| | | Sbjct 12182 TCCGCCAGTTTTTGCGCCATCTTTTACATGAAAAAGCAGGGGCTGATGCCCGGTC-TGTC 12124 Query 1456280 CTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 || |||||||| | ||| |||||||||| Sbjct 12123 GTTCAGCAACGAGCTCATCGCGCGCGACGAAG 12092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173929688683366