Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12187 129 5e-25 seq21550 91.5 1e-13 seq13311 89.7 5e-13 seq8895 89.7 5e-13 >seq12187 Length=9842 Score = 129 bits (142), Expect = 5e-25 Identities = 167/227 (74%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||| || | ||| |||||| || || ||||| || ||| Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| ||||||||||| || ||||| ||||||||||||||||| | ||| Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || |||||| ||| ||||| ||||| |||| | | ||||| |||| || Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCA-CGTTGTCAATAGTGTCTGAGCTC---TC 9795 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCT 35732 |||||||| |||||| || || || || | ||||| || || |||| Sbjct 9796 CACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq21550 Length=3044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || |||| || ||| | || ||||||||||| |||||||| Sbjct 2630 CTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAA 2571 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| | ||||||||||| || | || ||| |||||| Sbjct 2570 GATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCC 2531 >seq13311 Length=4779 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| ||||| | | | |||||| || | ||| |||||| || || ||||| || || Sbjct 4618 TCCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGC 4677 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || ||| || |||| || |||||||| |||||||| || | ||||||||||| | || Sbjct 4678 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGG 4737 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 || | |||||||||| ||||| ||||| Sbjct 4738 AATTCCCTCCTTGTCCTGAATCTTGGCCTTCA 4769 >seq8895 Length=8815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| ||||||||||| |||| || ||| |||| ||||| || || ||||| ||| Sbjct 770 TCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAAT 711 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | || ||||| | || | | || |||| | ||| ||| || | ||| Sbjct 710 ATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGT-CTTGAATTTTGGCCTTGACGTT 652 Query 35666 G-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | ||||| ||| || ||||||| ||||| || ||||| || | ||||| Sbjct 651 GTCAATAGTGTCAGAACTC---TCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTT 595 Query 35722 CACAAATATCTGCATTCTGTGCG 35744 |||||| |||||||| ||| || Sbjct 594 CACAAAGATCTGCATGGTGTTCG 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450566833914440