Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq195 134 1e-26 seq12187 120 3e-22 seq8895 107 2e-18 seq21550 105 7e-18 seq1570 93.3 4e-14 seq18528 84.2 2e-11 >seq195 Length=29407 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | ||||||||||| |||| || ||||| ||||| || ||||| || || Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||||| |||||||||||||| || || || ||||| || Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| || || || | || || || ||||| ||| Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || |||||||| ||||||||||| | || |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq12187 Length=9842 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| ||| | ||| |||||||| ||||| || || |||||||| | Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || ||||||||||| |||||||| ||||| || Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || ||| | ||||| || ||||| Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT 134707 || || || ||||| || ||||| | ||||| ||||| || Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq8895 Length=8815 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||||||||| || || ||||| ||||| |||||||| || ||| Sbjct 806 CCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCC 747 Query 134546 AACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | ||| || || |||||||| || || ||||| | || || || || Sbjct 746 A---GTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGT 690 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||||||||| ||||| ||| | ||||| || || Sbjct 689 GGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCT 630 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || | || ||||| ||||| || | ||||| || || || ||||| |||| Sbjct 629 ACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATGGTGTT 574 >seq21550 Length=3044 Score = 105 bits (116), Expect = 7e-18 Identities = 166/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||| ||| ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 2665 CCCCCACGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCC 2606 Query 134546 AACGGTGTGAG--AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||||| | || || ||||| || || ||||| |||| | |||||| || || Sbjct 2605 A---GTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGG 2549 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTC----GGACGA 134659 || ||||| ||||| || |||||||| || | | | || | ||||| |||| Sbjct 2548 GGGATGCCCTCTTTGTCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGAC-- 2491 Query 134660 TTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| | ||| ||||| || ||||| | || || | ||||| ||||| Sbjct 2490 --ACACGTCCAAAGTGATGGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq1570 Length=19022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 21716 AGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACG 21775 |||| ||||| |||| | ||||| || |||||||||| || | ||||||||||||| Sbjct 12065 AGAGGCAAGCGAAATCGCGGTGCATGCCTTCGTCGCGCGCGATGAGCTCGTTGCTGAACG 12124 Query 21776 TGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaa 21835 ||||||||||| | || | ||||| |||||||| || || ||| || |||| | Sbjct 12125 ACAGACCGGGCATCAGCCCCTGCTTTTTCATGTAAAAGATGGCGCAAAAACTGGCGGAGA 12184 Query 21836 aaaaCACGCCCTCCAC 21851 |||| | |||||| || Sbjct 12185 AAAATATGCCCTCGAC 12200 >seq18528 Length=5764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777 || || ||||||| |||| || || || || | ||||||||||| ||||| Sbjct 4200 AGGCACGCAAAATCACGATGCATACCTTCATCACGAGCGATCAATTCGTTACTGAAACAC 4141 Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaa 21837 | ||||||||| |||||| | || || |||||||| ||||| |||||| | |||||| Sbjct 4140 AAACCGGGCATCAAACCTTGCTTCTTCATGTAAAATATTGCACAAAAGCTCGCAGAAAAA 4081 Query 21838 aaCACGCCCTCCACAATGGCGAACGCCAC 21866 || | ||| || || ||| |||||||| Sbjct 4080 AAGATGCCTTCGACGCAGGCAAACGCCAC 4052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505144165652360