Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq30393 138 2e-27 >seq30393 Length=6106 Score = 138 bits (152), Expect = 2e-27 Identities = 595/933 (64%), Gaps = 30/933 (3%) Strand=Plus/Plus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 || ||||||||| ||| |||||||| || | ||| || ||||| ||||| || || Sbjct 855 TGCCATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCC 914 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 ||||| ||||||||||| ||||| || ||||| ||| | | | | | | Sbjct 915 ATCCAAGCTGATATTTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATA 974 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| |||| | | |||| ||||||||| ||||| |||||| ||| | || Sbjct 975 TCCCAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTG 1034 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || || | | ||| | | || || | ||| ||||||||| | | || Sbjct 1035 ATTCATACCAATCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGAC 1094 Query 39550 GGCCTCTGTTA-----TTATCGA----TGTTACTACCTCATCACTCGGTGGATGCAATAA 39600 || || | || |||| || |||| || | || | | | ||| | Sbjct 1095 AGCTTCAGATACGATATTATGGACTATTGTTTCTGAAGGTTTCCTTTTTAGGT--AATGA 1152 Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 | ||| | | | ||| |||| || ||| | || |||||||| || || || Sbjct 1153 A-----AAAGAGTTA-CAG-CGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTC 1205 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 || ||||| | || || ||||| ||||| || ||||| | ||||||||||||| || Sbjct 1206 ATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAA 1265 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || |||||||| | || ||||| || ||||| || | | | ||| || | Sbjct 1266 GGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACGC 1325 Query 39781 TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 ||||| |||| ||||| || || ||||| | ||||| || || |||| || || Sbjct 1326 CGTATCTTTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGT 1385 Query 39841 TTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 | || |||||||| |||| | |||| | || ||| | ||| |||||| || Sbjct 1386 GTGAATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAA 1445 Query 39901 CAGACTATACATTTC----TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAAC 39956 | || ||||| | ||||| ||| || || | ||| | | |||||| Sbjct 1446 TAAGCTGTACATCTGACTGTGAATAGATTCGTTGTATTGT----TGATAACTGTAAAAGG 1501 Query 39957 ATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTA 40016 | ||||| | |||||| || || || ||| || || | ||||||||| || | Sbjct 1502 CACGAGCTTCTGGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAA 1561 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGT- 40075 | ||||| | || || |||||||||| || | || ||| ||| |||| | || Sbjct 1562 TCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTCA--GAGTC 1619 Query 40076 GTCAATTTATTCC-AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 ||| | ||||| | ||| | || ||||| | |||||||| | | ||||| || Sbjct 1620 GTCCAACGATTCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCCAGAA 1679 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAAC 40194 ||| ||||||| ||| | | ||| ||| ||||||| || || || | || Sbjct 1680 ACTCGCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATAATAC 1739 Query 40195 AAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227 | ||| ||||||||||| ||||| ||||| Sbjct 1740 ATATCGATTTGGATTTTCAATTAGGATAGGTTC 1772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686563259114520