Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq30393 170 2e-37 seq18528 82.4 6e-11 >seq30393 Length=6106 Score = 170 bits (188), Expect = 2e-37 Identities = 489/733 (67%), Gaps = 23/733 (3%) Strand=Plus/Minus Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG 43912 ||||| || || || | | ||| ||||| || ||||||||| | | || ||| Sbjct 1589 TTGGCATTCTTCGCAGGGTCCGATGGGATTGTTAATGAAAATCTCGCCAGAAATTTTAGT 1530 Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 | ||||| ||| | |||||||| || ||||| | | |||| || ||| | Sbjct 1529 GATGAAGTGCAAATTCCAGAAGCTCGTGCCTTTTACAGTTATCAACAATACAACGAATCT 1470 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGAGAA 44031 ||||| | |||||||| | |||||||| ||||| ||| || |||| | || Sbjct 1469 ATTCACAGTCAGATGTACAGCTTATTGATAGATCGATACATAAAAAATCACGCACAA-AA 1411 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 | || | ||||||||||| | || | ||| || || | | |||||| ||||||| Sbjct 1410 GATTCATCTATTTAATGCGATTCACACCATCCCTTCGGTTTCAAAAAAAGCATACTGGGC 1351 Query 44092 CCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | |||||||| ||| | || | || | |||||| | | |||||||| ||| Sbjct 1350 TCAAAAATGGATCAATAAAGATACGGCGTTCGCAGAACGTTTAATAGCGTTTGCGTGTGT 1291 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 |||||| ||| | ||||| || || || |||||||||||||| || ||||||||| | Sbjct 1290 GGAAGGTATTCTATTTTCTGGTTCCTTCTGTGCCATATTTTGGTTGAAAAAACGAGGTCT 1231 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 |||||| || | | ||||| |||||||| ||| | |||||||| || ||| || Sbjct 1230 GATGCCCGGTCTTTCTTTTTCYAATGAGTTGATATCAAGAGATGAAGGATTGCATCAAGA 1171 Query 44272 TTTTGCT-TGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 || ||| | | || || || ||| | | | || |||||| | || | | | Sbjct 1170 GTTCGCTGTAACTCTT-TTTCATTACCTA--AAAAG-GAAACCTTCA-GAAACAATAGTC 1116 Query 44331 CA-GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACC- 44388 || |||| || || || || ||| ||| |||||||||| ||| | || | || Sbjct 1115 CATAATATCGTATCTGAAGCTGTCCAGAACGAAAAAGAATTTATCACAGAATCAATCCCA 1056 Query 44389 TGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGA 44448 ||| | || || |||||| || || ||| |||| || |||| | ||||||| Sbjct 1055 TGT-CGGATGATTGGTATGAATCAAAAATTAATGTCGGAATACATCGAATTCGTTGCAGA 997 Query 44449 TCGTTTACTTTTGGAACTGGGTTGCGATAAAC-ACTATATT--GTACAA--AACCCGTTT 44503 ||| ||| || ||| ||| |||| | | ||| || |||| || || || Sbjct 996 TCGATTA---TTAAAAC--AATTGGGATATTCTATTATCTTTGCAACAAAGAATCCATTC 942 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 ||||||||||||||||| ||||| || || || ||||||||||||||| | || || Sbjct 941 GATTTTATGGAAAATATCAGCTTGGATGGAAAGACTAACTTTTTTGAAAAAAGAGTCGGT 882 Query 44564 GAATATCAGCGAA 44576 |||||| ||||| Sbjct 881 GAATAT--GCGAA 871 >seq18528 Length=5764 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 44130 GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTTGCGGCCATA 44188 ||||||| |||||||| || |||||||| || ||||| | || | |||| | | ||| Sbjct 4047 GACTTGTGGCGTTTGCCTGCGTCGAAGGCATCTTTTTTTCTGCGAGCTTTTGTG-CAATA 4105 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAA 44246 |||| | ||||| | |||||||||||| || ||| ||||| || || || || Sbjct 4106 TTTTACATGAAGAAGCAAGGTTTGATGCCCGGTTTG--TGTTTCAGTAACGAATTGATCG 4163 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||||||||||| | ||| | |||||||| ||| Sbjct 4164 CTCGTGATGAAGGTATGCATCGTGATTTTGCGTGC 4198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397261063109215