Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12187 98.7 8e-16 seq1570 98.7 8e-16 >seq12187 Length=9842 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| |||| |||| ||||| || | ||| || || || || ||||||||||| Sbjct 9619 GCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGC 9678 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || ||||| |||| || ||||| || ||||| |||| | ||||| || || || || Sbjct 9679 CAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGG 9738 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| |||| | | || | |||||||| | || || Sbjct 9739 GATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCAC 9798 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGAT 27241 || || || || | || || || || ||||| || ||||| Sbjct 9799 CTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq1570 Length=19022 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 108555 GCAAGCGAACAAGCAATGTAATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAA 108614 ||||||||| || || | ||||||||||| ||||||||||| ||||||| || Sbjct 12069 GCAAGCGAAATCGCGGTGCATGCCTTCGTCGCGCGCGATGAGCTCGTTGCTGAACGACAG 12128 Query 108615 ACCCGGCATAATACCTTTCGTTTTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaa 108674 ||| ||||| | || | | |||| |||||||| || || ||||||| |||| ||||| Sbjct 12129 ACCGGGCATCAGCCCCTGCTTTTTCATGTAAAAGATGGCGCAAAAACTGGCGGAGAAAAA 12188 Query 108675 TATTCCCTCGAC 108686 ||| |||||||| Sbjct 12189 TATGCCCTCGAC 12200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424725986010216