Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq30393 140 4e-28 seq3475 136 5e-27 seq7861 123 3e-23 seq19131 96.9 4e-15 seq27800 93.3 5e-14 seq14094 84.2 3e-11 seq4982 82.4 1e-10 >seq30393 Length=6106 Score = 140 bits (154), Expect = 4e-28 Identities = 485/742 (65%), Gaps = 21/742 (3%) Strand=Plus/Plus Query 122369 CATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCA 122428 |||| || ||||| | || ||||| ||||| ||||| ||||| | ||| || ||||||| Sbjct 875 CATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCA 934 Query 122429 TAAAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCAC--CCCAACTTGTTTGAGGA 122485 |||| || ||||||||||| | || |||| | | | ||||| |||||| | | Sbjct 935 TAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAA-TTGTTTTAATA 991 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCT-TCTCAGAGTTCATACCGATGAGG 122544 ||||| | || | || ||||| || ||||| | | || |||||||| || | Sbjct 992 ATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGA-TTCATACCAATCATC 1050 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 |||||||| || || ||| || |||| || ||| || || || ||||| Sbjct 1051 CGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATA 1110 Query 122605 GCGTGGA---TAGTTTCGGTAGTGGGTC--TATTACGCAAAGTCTTGAAGAGCTCCACGG 122659 |||| | ||||| | || | || | ||| | || | ||||| | || | Sbjct 1111 TTATGGACTATTGTTTCTGAAG-GTTTCCTTTTTAGGTAATGAAA--AAGAGTTACA--G 1165 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 | ||||| || || | || ||||||| || || | ||||| || || | ||||| | Sbjct 1166 CGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGG 1225 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 122779 |||| ||||| || || ||||||||| | || || ||||| || || || || | |||| Sbjct 1226 GCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATAC 1285 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACC 122839 | ||||||||||||||||| | | ||||| ||||| | || |||| || | || Sbjct 1286 CTTCCACACACGCAAACGCTATTAAACGTTCTGCGAACG-CCGTATCTTT--ATTGATCC 1342 Query 122840 ATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATA 122899 |||| ||||| | || || || || | || | || || || || | ||||| Sbjct 1343 ATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATA 1402 Query 122900 ACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959 || |||||| | || || |||||| || |||||| || | | | Sbjct 1403 GATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGAC 1462 Query 122960 CATGAACCATTTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAA 123019 |||| ||| || | |||||| ||| || | || ||||| || || | Sbjct 1463 TGTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCA 1522 Query 123020 CCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGA 123079 | ||||| |||||| | || ||| ||| |||||| ||||||||||| || |||| Sbjct 1523 CTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGA 1582 Query 123080 ATGCCAGGATGTACTTTATGAA 123101 |||||| || | ||||||| Sbjct 1583 ATGCCAATATATTGCTTATGAA 1604 >seq3475 Length=17180 Score = 136 bits (150), Expect = 5e-27 Identities = 474/729 (65%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 71686 TTTGGGATTGTACATCTTTTTATGGAGTTTCCAGAGGTTGGGACTTCCAACCCTAAACCC 71745 ||| | ||| || |||||| ||| | | ||| | || ||| ||||| | || | Sbjct 598 TTTTGAATTATATTTCTTTTGATGCATCTGCCAAAACTTAGGATGGCCAACTTTGAAATC 657 Query 71746 CTTTCTAACTGTGGCTTTGTACCAGAATAC-ACAGTCGGTGATCTTATTAGATTTTACA- 71803 |||||| | | || || ||||| ||||| ||| || |||||||||| |||||| Sbjct 658 CTTTCTTATAGATGCCTTATACCAAAATACCACA-TCTTCGATCTTATTAC-TTTTACTC 715 Query 71804 GTATTGTCTAATACGAGGCACTCATAGTTTTCTGTACACGCATCCATCACTT--TTGAAA 71861 || || ||||| || || || ||||| ||||||||||| || ||| |||| ||| | Sbjct 716 GTGTTATCTAAAACTAGACATTCATAATTTTCTGTACAAGCGGTCATGACTTGATTG--A 773 Query 71862 ACATGTCAAATGAGGGGAAGATCCCAAAAAATGATTTGTACAATTTCTCTCTATTCTGAA 71921 ||||||| |||| || ||||| || ||||| ||| | | || || | |||||||| Sbjct 774 ACATGTCGAATGTTGGAAAGATTCCGAAAAAGTTTTTCCAAATCTTTTCACGATTCTGAA 833 Query 71922 TGATATTTTCCCTAAGTATAAATACATAATCTACATTTGCCCTAAGTGCTGGTGGCAGAT 71981 |||||||| || || || || || ||||||| ||| ||||| | |||| |||| Sbjct 834 CAATATTTTCTCTTAGGATGAAAACRTAATCTATATTACATCTAAGATCGGGTGAAAGAT 893 Query 71982 CCATGACGTACTGCATTGTCAACATGAAGAAGATATTATAGTGCCTACCATTCATGAAAC 72041 |||| || ||||| | || ||| || | || | || || ||||| || ||| Sbjct 894 CCATACAATATTGCATCGCCAGCATTAAACAAATCCCCCAATGTCTTCCATT-ATAAAAA 952 Query 72042 A-CTGGCGAATACAAGTATCCTTCAGGAACTTACTATCATACATACAATCATCAAGGAGC 72100 | | | || | || | || ||||| |||||||||| |||||||| | || Sbjct 953 ATAAGTCTCATTGTTTTGTCTCTTAGTAACTTTTTATCATACATGCAATCATCTAAAAGT 1012 Query 72101 ATGAAAGCACCATTATATGGATTCTTCCCCTTTGTGCCAATTATCTTTCTCTGCCTGGAT 72160 | || |||| || | | ||| | |||| |||| | || | || || Sbjct 1013 AAAAATGCACTTTTGT-TCTTTTCAGTACTTTTG-----ATTACCGTTTTTTGTCTTTTG 1066 Query 72161 ATAACCCGCTCTATTGCATCTCTGTCGTATTCACCGTAGACAAAGAGGTCTGGAATAAAC 72220 || | || | | || | | ||||| |||||||| | || || | |||| Sbjct 1067 ATCATTTTTTCAACGACRTCAATTTTAAATTCATTATAGACAAATAAATCAGGCACAAAC 1126 Query 72221 TCACCGTAAAAGTGATTCCCCTCCTCCGTACCCGATAGTACAATCCCTGCTGGTATATGT 72280 | ||||| ||| || || |||||||| || | |||| || | || |||||| Sbjct 1127 TTTTGATAAAAACAATTACCTTCTTCCGTACCGGACATGACAACTCCAACGGGAATATGT 1186 Query 72281 TTCTTGTGATACATAATATCCTTTACTAAGGTTGACTTCCCTGTGTTACGCTTTCCGATA 72340 || |||| ||||| ||||| | || || || || ||||| || | || || | Sbjct 1187 TTTTTGTAGTACATGATATCAGCAATCAATGTCGATTTGCCTGTATTTCTTTTACCACAA 1246 Query 72341 AACACACAGACTCTATCATCTGACATAGCCTCGGGTTTGAATTTCCTCAATTGAAGATTC 72400 |||||| ||||| | ||| |||| || | ||||||| |||| |||| |||| Sbjct 1247 AACACAAGAACTCTGTTATCATCAATAGTTCTAGGATCGAATTTCTTCAACTGAATATTC 1306 Query 72401 AT--TCTAC 72407 || ||||| Sbjct 1307 ATAATCTAC 1315 >seq7861 Length=6948 Score = 123 bits (136), Expect = 3e-23 Identities = 279/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA---CGCCCAGCTTGATTT 111724 |||||||| || ||||| |||| |||| || |||||||| | ||| | |||| Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 |||||||| || ||| |||| || || |||||||| || | || || | || || Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || |||||||| | | | | | | | |||||||| | || || || Sbjct 4752 TTGGTGCCCCGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCCCT 4811 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 || || | |||||| ||| ||||||||| | || || | |||||||| | ||| | Sbjct 4812 CCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATACTG 4871 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || || || | || || | |||||| ||| || ||| || | ||| || || || ||| Sbjct 4872 TCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGTTG 4931 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 112024 ||||| || |||| ||||| ||||| || | | ||| || |||||||| | Sbjct 4932 AAGAGCGTAGGTGACGCGTGTGTGAACCAACGCTCGCTCATAAGGTGGTATGTCTTGATA 4991 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || |||| || ||| ||||| | ||||||||||| | ||||| ||| || Sbjct 4992 GCTTGCTCGATGTTCTCTTGGTGAATGCCCACGGCGACCCGCATAAGCATGTGCTGAGG 5050 >seq19131 Length=3502 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 170027 GCAAAGCATAACAGCGAACAAGATTGTTGGGTCATAATCAAGGACATTGTTTATGACCTC 170086 || |||||||||| ||| ||| || ||||| || | | | | || |||||| || Sbjct 328 GCCAAGCATAACACAGAAGCAGACTGCTGGGTTATTTTGCACAATAAAGTATATGACGTC 269 Query 170087 ACAAAATTCCTTCCAGATCACCCCGGTGGTAAGAAGGCGATCATGCTCTTTGCTGGCAAA 170146 ||||| ||||| || || || || || || || ||||| || | || |||||||| || Sbjct 268 ACAAAGTTCCTGCCWGACCATCCAGGAGGCAAAAAGGCCATTGTSCTATTTGCTGGTAAG 209 Query 170147 GATGCAACTGAAGAGTTTGATATGCTTCA 170175 ||||| || ||||| ||||||||||| || Sbjct 208 GATGCCACGGAAGAATTTGATATGCTGCA 180 >seq27800 Length=2063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| || || | || || || || |||| || || ||||| || || |||||| Sbjct 594 CCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCCGGCATCAGTCCGCGCTTC 535 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||||| | ||||||||||| | ||||||||||||| |||||||| ||||| || Sbjct 534 TTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATGCCCTCCACGCACGCGAAA 475 Query 122797 GCAAAAAGGCG 122807 || | ||| || Sbjct 474 GCGAGAAGACG 464 >seq14094 Length=11654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||||||||| |||||||||||||| || |||||| || || Sbjct 1879 GCAAAGTCGCAGTGGAGACCCTCATCACGGGAAATAAGTTCGTTAGAGAAGGTGAGCCCG 1820 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG 122752 ||||| | || || ||||||| ||| ||||||| Sbjct 1819 GGCATCAATCCACGTTTCTTCAGCCAGTAAATAG 1786 >seq4982 Length=8950 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 20335 CCCTTGG-ATACATGCGTGGAAGAACATTCAATAACACTGTGATTATCGCCGACGAAATG 20393 || |||| ||||||||||||||| ||||| || ||| || |||| | || || || ||| Sbjct 3704 CCGTTGGCATACATGCGTGGAAGGACATTTAAGAACTCTTGGATTGTTGCTGATGAGATG 3763 Query 20394 CAAAATAGCACACCAAATCAAATGAAAATGCTTCTCACTCGCATCGG 20440 ||||| ||| | | |||||||| ||||| ||||||||| |||| Sbjct 3764 CAAAACTCAACAGGACAGCAAATGAAGATGCTGCTCACTCGCCTCGG 3810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627716076352800