Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq30393 129 7e-25 seq7861 122 1e-22 seq27800 87.8 2e-12 seq188 87.8 2e-12 >seq30393 Length=6106 Score = 129 bits (142), Expect = 7e-25 Identities = 494/759 (65%), Gaps = 34/759 (4%) Strand=Plus/Plus Query 129716 TCCAGCTTGC-CATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT 129774 |||||||| | |||| || || || | || || || ||||| ||||| || |||||||| Sbjct 864 TCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCT 923 Query 129775 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCAC-TCCAATC 129832 |||||| ||||||||||| ||||| ||||||| || |||| | | | | ||| | Sbjct 924 GATATTTTCCATAAAATCGAATGGATTCTTTG--TTGCAAAGATAATAGAATATCCCAAT 981 Query 129833 TGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCT-TCTCGGAGTTCAT 129891 ||||| | | ||||| | ||| | || ||||| || ||||| | | || ||||| Sbjct 982 TGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGA-TTCAT 1040 Query 129892 ACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 129951 ||| || | |||||||| | || ||| || | || || | | |||||||| Sbjct 1041 ACCAATCATCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTC 1100 Query 129952 CCGCACGATGGCGTGAA---TGGTCTCCGTGCCAGGT---CTATTGCGCAAAGTCTTGAA 130005 ||||| || | | || || | |||| || || | || | || Sbjct 1101 AGATACGATATTATGGACTATTGTTTCTGA---AGGTTTCCTTTTTAGGTAA-TGAAAAA 1156 Query 130006 GAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAA 130065 ||||| || || ||||| || || | || || || | || || | ||||| || || Sbjct 1157 GAGTTACA--GCGAACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAA 1214 Query 130066 GCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGA 130125 | ||||| ||||| ||||| || || |||||||| || || ||||| || || ||||| Sbjct 1215 AGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGA 1274 Query 130126 GAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTT 130185 || | || || ||||||||||| ||||| | | ||| || || || || | | | Sbjct 1275 AAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCGAA--CGCCGTA-TC 1331 Query 130186 TGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATAC--ACGGGACGGTCTGG 130243 | ||| | ||| || ||||| | || |||| | || || | |||| ||| || Sbjct 1332 TTTATTGATCCATTTTTGAGCCCAGTATGC--TTTTTTTGAAACCGAAGGGATGGTGTGA 1389 Query 130244 ATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGT----ACTTATCTATGAG 130299 ||||| | ||| || | |||||| || ||| ||| |||| | |||| || || Sbjct 1390 ATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCTATCAATAAG 1449 Query 130300 TTTTGAATATGTTTCGCCATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCG 130359 | | || || | || || ||| || | ||||| ||| || | || Sbjct 1450 CTGTACATCTGACTGTGAATAGA----TTCGTTGTATTGTTGATAACTGTAAAAGGCACG 1505 Query 130360 CGCTTCGCTTATCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCC 130419 ||||| || || || ||||| |||||| | || ||| ||| |||||| || Sbjct 1506 AGCTTCTGGAATTTGCACTTCATCACTAAAATTTCTGGCGAGATTTTCATTAACAATCCC 1565 Query 130420 ATCGGACCCAGCAAAAAACGCCAGGATATACTTTATGAA 130458 ||||||||| || || || |||| |||| ||||||| Sbjct 1566 ATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAA 1604 >seq7861 Length=6948 Score = 122 bits (134), Expect = 1e-22 Identities = 279/415 (67%), Gaps = 9/415 (2%) Strand=Plus/Plus Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTT 119198 |||||||| ||||| ||||| | |||| | ||||| || | |||| |||| | Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 ||||| | |||||| |||| || ||||||||||| || | ||| || | || || Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 119259 TTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCGTGGATGTGCATACCAATAC 119316 || || |||||||| | ||| | | | | || | ||||||| | || || | Sbjct 4752 TTGGTGCCCCGAAT--GTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCC 4809 Query 119317 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 119376 | || || | |||||| ||| || |||||| | || || ||||||| || ||||| Sbjct 4810 CTCCGGCGCTCTTTGAAATTGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATAC 4869 Query 119377 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGT 119436 ||| | || |||| || | ||||||||| || ||||| | || || || |||| Sbjct 4870 TGTCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGT 4929 Query 119437 TGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCA 119496 ||||||| || |||| |||||| ||||| || | | ||| || ||| |||| | Sbjct 4930 TGAAGAGCGTAGGTGACGCGTGTGTGAACCAACGCTCGCTCATAAGGTGGTATGTCTTGA 4989 Query 119497 -AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 || || | |||| || |||||| || | | ||||||||||| ||||| Sbjct 4990 TAGCTTGCTCG-ATGTTCTCTTGGTGAATGCCCACGGCGACCCGCATAAGCATGT 5043 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || |||||||| || || || || || || | || || || | |||| |||| || Sbjct 3702 GGTAGGGCGATGGAGGCAAGGTTGCATACTGCCGTTTCCTCGGGAGAAGTGAACTCGATG 3761 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || |||||||||||||| || ||| |||||||| | ||||| ||| || || || | Sbjct 3762 ATCTCCGTGCACAAGTTCGAGGACTTGATGGTGCCGAGGTTCTGTTGGTTGGATTTACGG 3821 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || ||||||||| | | ||| ||||| | |||||||| ||||| || || ||| Sbjct 3822 TTTGCTGCATCCTTGAACAACATATATGGGTTGCCCGTCTCGACTTGGGCCTCCAGGATA 3881 Query 118884 GC 118885 || Sbjct 3882 GC 3883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 |||||| ||| | ||||| ||||| |||||||| ||||| |||| ||| || | ||||| Sbjct 2912 ATAGATGTTGCTTGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGA 2971 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 ||| ||||||||||| |||| ||| ||| ||| || Sbjct 2972 GGCCGTGGGCATGGGAGCCACGAGGAGGGAGTTGCG 3007 >seq27800 Length=2063 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || | |||||| || || |||| || || ||||| || || |||||| Sbjct 594 CCCTCGTCGCGAGCGATGAGCTCGTTGCTGAAGGCGAGCCCCGGCATCAGTCCGCGCTTC 535 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||| || || || || || | ||||||||||| |||||||| |||||||| Sbjct 534 TTCAACCAAAAGATAGCGCAGAAACTCGCGGAGAAGAAGATGCCCTCCACGCACGCGAAA 475 Query 130154 GCAAAGAGACG 130164 || | ||||| Sbjct 474 GCGAGAAGACG 464 >seq188 Length=36365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 57577 TCAAACACACCATCGTAGTCATCCACATTCTCCATGACGGACTCAGACCAACCCTCAAGT 57636 ||||| ||| ||| || ||||| | | ||||| || ||||||||||||||| | | Sbjct 5966 TCAAAAACATTATCATAATCATCAATACCGTCCATCACATTCTCAGACCAACCCTCTAAT 5907 Query 57637 TGGATCTCAAATGGGTTGTACCTTTTGTTGAGGAACTCCAGACCCGTCACACAGGCAACC 57696 | ||| |||||||| | ||||||||| || | ||||| || || |||||| | || | | Sbjct 5906 TTGATATCAAATGGATCGTACCTTTTATTTAAAAACTCAAGTCCTGTCACAGATGCCATC 5847 Query 57697 AACATACG 57704 ||||| || Sbjct 5846 AACATTCG 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618124103903080