Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3475 235 6e-57 seq30393 134 2e-26 seq19131 134 2e-26 seq4015 132 6e-26 seq27800 104 3e-17 seq319 86.0 7e-12 >seq3475 Length=17180 Score = 235 bits (260), Expect = 6e-57 Identities = 500/732 (68%), Gaps = 24/732 (3%) Strand=Plus/Plus Query 74073 ATGTTTGGGATTATACATCTTATTATGAAGTCT-CCACAAGTCTGGACTTCCAACTCGGA 74131 |||||| | |||||| |||| | ||| | ||| ||| || | ||| |||||| || Sbjct 595 ATGTTTTGAATTATATTTCTTTTGATGCA-TCTGCCAAAACTTAGGATGGCCAACTTTGA 653 Query 74132 AGTTTTTGCGTATAGATGCCTTGTACCAAAACACACAATCTTGTATCCTGTTTGATTTTA 74191 | | || | |||||||||||| |||||||| || ||||| || || || ||||| Sbjct 654 AATCCTTTCTTATAGATGCCTTATACCAAAATACCACATCTTCGAT-CTTATTACTTTTA 712 Query 74192 CT-GTATTATCTAACACGAGACATTCATAGTTTTCTGTACAAGCGTCCATGACCTTGTTA 74250 || || |||||||| || ||||||||||| ||||||||||||||| |||||| | || Sbjct 713 CTCGTGTTATCTAAAACTAGACATTCATAATTTTCTGTACAAGCGGTCATGACTTGATTG 772 Query 74251 AACATGTCAAAGCTTGGAAAGATACCAAAAAAGGATTTATAGAGTTTCTCCCTATTTTGA 74310 |||||||| || |||||||||| || |||||| ||| | | || || | ||| ||| Sbjct 773 AACATGTCGAATGTTGGAAAGATTCCGAAAAAGTTTTTCCAAATCTTTTCACGATTCTGA 832 Query 74311 AGTATATTTTCCCTAAGAAGAAACACATAATCAACATTAGCTCTGAGAGCTGGTGGGAGA 74370 | |||||||| || || | || || ||||| | |||| ||| ||| | |||| ||| Sbjct 833 ACAATATTTTCTCTTAGGATGAAAACRTAATCTATATTACATCTAAGATCGGGTGAAAGA 892 Query 74371 TCCATACAATATTGCATAGTGAGCATGAAGAAGATCTTCCAGTGTCTTCCGTTCATGAAG 74430 ||||||||||||||||| | ||||| || | ||| ||| |||||||| || || || Sbjct 893 TCCATACAATATTGCATCGCCAGCATTAAACAAATCCCCCAATGTCTTCCATT-ATAAAA 951 Query 74431 CA-CTGCCTGATGCATGTATCCTTGAGGAACTTGTTATCATACATACAATCGTCAAGAAG 74489 | | || || | | || | || ||||| ||||||||||| ||||| || | ||| Sbjct 952 AATAAGTCTCATTGTTTTGTCTCTTAGTAACTTTTTATCATACATGCAATCATCTAAAAG 1011 Query 74490 CATGAAGGCTCCGCAATTTTG---TTTACCGTCAC---CCACCAACTTCCTCTGTCTCGC 74543 | || ||| ||||| ||| | || || | | | | | ||||| Sbjct 1012 TAAAAA-----TGCACTTTTGTTCTTTTCAGT-ACTTTTGATTACCGTTTTTTGTCTTTT 1065 Query 74544 CATGACTCTCTCTATCGCATCTCTATCGTAA--TCGCCATACACAAAGAGATCTGGAATA 74601 || | | | || | || | || || ||| || ||| ||||| | ||| || | | Sbjct 1066 GATCATTTTTTC-AACG-ACRTCAATTTTAAATTCATTATAGACAAATAAATCAGGCACA 1123 Query 74602 AATTCTGAATAGAAATGATTCCCCTCCTCTGTTCCTGAGAGAACTATACCAGCTGGAAGA 74661 || | | ||| ||| ||| || || || || || || | || | ||| | |||| | Sbjct 1124 AACTTTTGATAAAAACAATTACCTTCTTCCGTACCGGACATGACAACTCCAACGGGAATA 1183 Query 74662 TGTTTCTTATGGTACATAATATCCTTGACGAGGGTTGATTTACCTGTGTTTCGTTTACCT 74721 ||||| || | |||||| ||||| | | || ||||| ||||| |||| |||||| Sbjct 1184 TGTTTTTTGTAGTACATGATATCAGCAATCAATGTCGATTTGCCTGTATTTCTTTTACCA 1243 Query 74722 ATAAAAACACACACCCTGTCGTCCGATATCGTCTCAGGTTTGAATTTCCTCAATTGAAGA 74781 ||| ||| || |||| || || || ||| | ||||||| |||| |||| | Sbjct 1244 CAAAACACAAGAACTCTGTTATCATCAATAGTTCTAGGATCGAATTTCTTCAACTGAATA 1303 Query 74782 TTCAT--TCTAC 74791 ||||| ||||| Sbjct 1304 TTCATAATCTAC 1315 >seq30393 Length=6106 Score = 134 bits (148), Expect = 2e-26 Identities = 492/755 (65%), Gaps = 26/755 (3%) Strand=Plus/Minus Query 94513 TTCATAA--AATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATA 94570 ||||||| |||| || |||||||||| || || |||||||| |||||| ||| ||| Sbjct 1604 TTCATAAGCAATATAT--TGGCATTCTTCGCAGGGTCCGATGGGATTGTTAATGAAAATC 1547 Query 94571 TCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATC 94630 || | || ||| |||||| |||||| | ||||| | |||| || |||| Sbjct 1546 TCGCCAGAAATTTTAGTGATGAAGTGCAAATTCCAGAAGCTCGTGCCTTTTACAGTTATC 1487 Query 94631 AGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTA 94690 | | || ||| | || | ||| ||||| | | ||||| || || | Sbjct 1486 AACAATACAACGAATCTATTCACAGTCAGATGTACAGCTTATTGATAGATCGATACATAA 1427 Query 94691 AGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGT-GTATTCAA 94749 | || || | |||| || || ||| | || || || || | || | | ||||| Sbjct 1426 AAAATCACGCACAAAAGATTCATCTATTTAATGCGATTCACACCATCCCTTCGGTTTCAA 1367 Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG-CGTTCCTTTGCTGAGCG 94808 || ||||| | |||||| || ||| | ||| | | || ||||| || || || Sbjct 1366 AA-AAAGCATACTGGGCTCAAAAATGGATCAATAAAGATACGGCGTTC----GCAGAACG 1312 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 | | || ||||||||||| || ||||| | || |||||||||||||| || || | Sbjct 1311 TTTAATAGCGTTTGCGTGTGTGGAAGGTATTCTATTTTCTGGTTCCTTCTGTGCCATATT 1252 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 |||| | || || |||||||| ||||| ||||| | || || || ||| | || || | Sbjct 1251 TTGGTTGAAAAAACGAGGTCTGATGCCCGGTCTTTCTTTTTCYAATGAGTTGATATCAAG 1192 Query 94929 TGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAACC 94988 || || ||| | || |||||||| || || |||| || | ||| | || || Sbjct 1191 AGATGAAGGATTGCATCAAGAGTT--CGCTGTAACTCTT--TTTCATTACCTAAAAAGGA 1136 Query 94989 AA-CGACTGAGACTA---TTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 || | | || || | | ||| ||| || ||||| || ||| || |||| || Sbjct 1135 AACCTTCAGAAACAATAGTCCATAATATCGTATCTGAAGCTGTCCAGAACGAAAAAGAAT 1076 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 | || || | | ||||| | || ||||||||| || |||||| |||| Sbjct 1075 TTATCACAGAATCAATCCCATGTCGGATGATTGGTATGAATCAAAAATTAATGTCGGAAT 1016 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGT-GCCTCCAA--TTTGGA 95161 | || || | || | ||| |||| || || || || ||| | || | |||| | Sbjct 1015 ACATCGAATTCGTTGCAGATCGATTATTAAAACA-ATTGGGATATTCTATTATCTTTGCA 957 Query 95162 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 95221 | | ||||||||||| || || ||||| || || ||| | || || ||||| ||||| | Sbjct 956 A--CAAAGAATCCATTCGATTTTATGGAAAATATCAGCTTGGATGGAAAGACTAACTTTT 899 Query 95222 TCGAAAAGAGGGTTGGGGACTATG-GCAAGATGGA 95255 | ||||| || || || || |||| | ||| |||| Sbjct 898 TTGAAAAAAGAGTCGGTGAATATGCGAAAGCTGGA 864 >seq19131 Length=3502 Score = 134 bits (148), Expect = 2e-26 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 158810 CTGAAATTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGT 158869 |||| |||| |||||||| || |||| ||| || ||||| ||| | | ||| || | Sbjct 336 CTGAGGTTGCCAAGCATAACACAGAAGCAGACTGCTGGGTTATTTTGCACAATAAAGTAT 277 Query 158870 ATGATCTCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTG 158929 |||| |||||||||| |||| || |||||||| ||||| ||||| || | || |||| Sbjct 276 ATGACGTCACAAAGTTCCTGCCWGACCATCCAGGAGGCAAAAAGGCCATTGTSCTATTTG 217 Query 158930 CTGGAAAGGATGCGACGGAAGAGTTTGATATGCTCCA 158966 |||| |||||||| |||||||| ||||||||||| || Sbjct 216 CTGGTAAGGATGCCACGGAAGAATTTGATATGCTGCA 180 >seq4015 Length=12234 Score = 132 bits (146), Expect = 6e-26 Identities = 446/682 (65%), Gaps = 33/682 (5%) Strand=Plus/Minus Query 69403 ATACTCTTCATTGAGTTCAACACCAACAAATGGGAGACCGAGGTCTCTCGCCGCCACACA 69462 |||||||| ||| | ||||| || | || | |||||| | | |||| || ||||| Sbjct 2284 ATACTCTTTATTCAATTCAAATCCGATGAAATCAATACCGAGATGTTTCGCTGCGACACA 2225 Query 69463 TTCACTCCCAGATCCCGCAAATGGTACAAAGACAAAAC---CATTATCTGGATCTTGTCT 69519 ||||||||| ||||| |||| || || || || ||||||| | | | | Sbjct 2224 TTCACTCCCCGATCCTACAAAAGG---AATTACTAATTTTGCATTATCATGTTTATTCAT 2168 Query 69520 ACACGATCTCAACAATTTATCACATAATACAAGTGGTTTTTGAGTTGGGTGGTTTACTCT 69579 | | | | || ||||| | ||| || | | |||||||| ||| || || || |||| Sbjct 2167 TGATGCTTTTAATAATTTTTTACACAAATCGAATGGTTTTTTAGTAGGATGATTGACTCG 2108 Query 69580 CTCATTTTTACCAGCACCACCCGCGAGTGCTGGAATCTTAATTACATCTCTTGGTAAAGC 69639 || || ||||| |||||| | | || || |||||| |||||||||| ||| Sbjct 2107 TTCTTTCGCACCAGAACCACCGCTCAACGATGATATTTTAATTGCATCTCTTGGCTGAGC 2048 Query 69640 TCCACCTGGATGAGCT--GTATA-AGTTGTACTCTTTTCACCATTTGAAAATCTACCCTT 69696 || | ||| || ||||| |||| || || ||| | |||||| || || Sbjct 2047 ACCGTTTTCATGTCCTTTGTATACAGTT----TCAGTTTACCGTCAATAAATCTTCCTTT 1992 Query 69697 GGTCGCTTTTC-TCTCTTTTCCAGCCGCTCCT-TTTATAAATCCATCGGTATATGGTTCT 69754 || ||||||| | | ||||| | | | |||||| | | |||||||||||||| Sbjct 1991 CGTAGCTTTTCGTATTTTTTCAA-----TATTGTTTATACGTGCTTCGGTATATGGTTCA 1937 Query 69755 CTGACATCGTCTCGGTGAAATACTCTGTCTTCCTTCCAGAGAACG-ATTATACTTTCATG 69813 | | ||| ||| | ||||| || || || || | ||| | ||||||||| || Sbjct 1936 CGAATATCATCTTTATTAAATA-TCGGTTTTGATTTATAACAACATAATATACTTTCGTG 1878 Query 69814 TGAACGTTGCCAAAAGTTGAGAGAAGGGACAT-TCTTATTTGTATAATGCCACACAAGCC 69872 ||| |||||||||||||| | | || || || ||| || ||||||||||| | | || Sbjct 1877 TGATCGTTGCCAAAAGTTTA-ATAACGGTGATACCTTGTTAGTATAATGCCATATCAACC 1819 Query 69873 AACGCCGATTTATATTTTGTGGAATACGAGCGAGAATGAGTGCAAGAATTTCACTAAAAC 69932 | || ||||||||| || | | ||| | | | ||||||||||||| Sbjct 1818 ATCGTACATTTATATT------GATTCTTGTTCTAATAAAAGATAAGATTTCACTAAAAC 1765 Query 69933 CATAAATAAACATTGTACCATCTCGTCTCAGTATACGCAAACAACCCTCAATCCACTCAT 69992 |||| || | | || ||| || | | ||||| | ||| | ||||| |||| Sbjct 1764 CATATATGTAAAGAGTTCCAGACGGTATTAAGATACGAATACATTGATTTATCCATTCAT 1705 Query 69993 CGCACCACTTTAGGTATTCATCCATTGGTTGTTTATCACTTTTGTTTCCAAAGTCTTT-- 70050 | |||||| || || || |||| |||||| ||||| | || || |||| ||| Sbjct 1704 CACACCACAATAAATAAGTATTCATTTCTTGTTTGTCACTATCATTACCGAAGTTTTTTT 1645 Query 70051 -ACCAATATTATATGGTGGATC 70071 ||||| ||||| || ||||| Sbjct 1644 CCCCAATGTTATACGGAGGATC 1623 >seq27800 Length=2063 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || ||||| || ||||| ||||||||||| | ||||||||||| | |||| Sbjct 471 TCGCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGCGCTATCTTTTGGT 530 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 | |||||||| || || ||||| || ||| |||| ||||||||| ||| |||| |||| Sbjct 531 TGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCTCATCGCTCGCGACG 590 Query 94934 AGGGACTCCACCAAGAGTTTGC 94955 |||| | ||| ||| || || Sbjct 591 AGGGGATGCACAGAGACTTCGC 612 >seq319 Length=35189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 || ||| ||||| ||||| ||| |||| ||||| ||||| |||||| |||| || Sbjct 33865 GTTTATCAAGGACAAAGCTGAAAAGCAGCACCTCTTCCGGGCCATACAAACAATTCCTTG 33806 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 |||| ||||||||||| ||||| ||||||||| | | || | || | || || Sbjct 33805 CGTTCAGAAGAAAGCGGAGTGGGCCATGAAGTGGATCG--GCAGTG-ATAGTACTTTCGC 33749 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 |||||| || | | || || || || ||||| ||||| |||||||| | ||| || Sbjct 33748 TGAGCGTCTTCTAGGCTTCGCTTGCGTGGAGGGCATCTTTTTCTCTGGAAGGTACTGTGC 33689 Query 94863 TATTTA 94868 | |||| Sbjct 33688 TCTTTA 33683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582967397945320