Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7861 183 3e-41 seq27800 84.2 2e-11 seq4459 82.4 8e-11 >seq7861 Length=6948 Score = 183 bits (202), Expect = 3e-41 Identities = 294/420 (70%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | | ||||| ||||| || ||||| || || || || || || Sbjct 5050 CCTCAGCACATGCTTATGCGGGTCGCCGTGGGCATTCACCAAGAGAACATCGAGCAAGCT 4991 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 | |||||||| |||| |||||| || | ||||| |||||| | || || || ||| Sbjct 4990 ATCAAGACATACCACCTTATGAGCGAGCGTTGGTTCACACACGCGTCACCTACGCTCTTC 4931 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| ||| ||| || ||||| ||| | | || ||||| || ||| Sbjct 4930 AACGCCGGCACGCCACGCCCTCAGCTGAGCAGCTGCTTCTTGATTGCAATGAAAGACGAC 4871 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGC-GCACATCTCCAAGTGGTCCGG 19341 || || || || |||||||| ||||| |||||||| || ||| || || ||| | |||| Sbjct 4870 AGTATCGAAGGTATCTACGACACGCTGAAGGAGTGTGCTGCA-ATTTCAAAGAGCGCCGG 4812 Query 19342 GGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || || | || ||||| || | ||| || || || || Sbjct 4811 AGGGATCGGCCTCAACATCCATAACATCCGTTCTACCAGTAGTTACATTCGGGGCACCAA 4752 Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 |||| | |||| |||||||| ||||| || ||||||||| |||| ||| | || || Sbjct 4751 CGGAACCTCGAACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACACTGCCCGCTATGT 4692 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 | | ||||| || || || || ||||| | |||||||||||||| || || |||||||| Sbjct 4691 CGATCAGGGTGGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGAACCTTGGCACGC 4632 Score = 183 bits (202), Expect = 3e-41 Identities = 285/405 (70%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTG 79542 |||||||| || || || ||||||||||| | |||||| ||||| || || ||||| | | Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 79543 ACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCG 79602 || || ||||| |||| |||||| || || ||||| || |||||||||| | | ||| Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 79603 TTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCC 79662 || || || || ||| | | | || ||||| | || || ||||| || Sbjct 4752 TTGGTGCCCCGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCCCT 4811 Query 79663 CCGGACCACTTGGAGATGTGC-GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGA 79721 |||| | ||| || || ||| || |||||||| ||||| |||||||| || ||||| Sbjct 4812 CCGGCGCTCTTTGAAAT-TGCAGCACACTCCTTCAGCGTGTCGTAGATACCTTCGATACT 4870 Query 79722 GTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTT 79781 |||||| ||||| || | || ||||||||| || ||| ||| ||| |||||||| Sbjct 4871 GTCGTCTTTCATTGCAATCAAGAAGCAGCTGCTCAGCTGAGGGCGTGGCGTGCCGGCGTT 4930 Query 79782 GAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTT 79841 |||||| || || | |||||| ||||| | | |||||| || | ||| |||| | Sbjct 4931 GAAGAGCGTAGGTGACGCGTGTGTGAACCAACGCTCGCTCATAAGGTGGTATGTCTTGAT 4990 Query 79842 GACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 | || || || || ||| ||||| || ||||| ||||| Sbjct 4991 AGCTTGCTCGATGTTCTCTTGGTGAATGCCCACGGCGACCCGCAT 5035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 |||||| |||||||| ||||| | || | ||||||| |||||||||| || || Sbjct 4310 CAGGCCTTCGCACTCGTTGGGGCAGAACAAGGCCCAGTCCCCGTCCTTCTCCACACGTTC 4369 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 |||||| ||||| | | ||||||| |||| ||| ||||||||||| ||| |||||| | Sbjct 4370 CATGAAAAGGTCTGAGGTCCACAGT-CCGTAGAAAAGGTCGCGGCAGCGCTGCTCCTCCT 4428 Query 79442 CGCCC 79446 |||| Sbjct 4429 TGCCC 4433 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || || |||||||| || ||||| || || || || | ||||||||| || |||||| Sbjct 3714 GAGGCAAGGTTGCATACTGCCGTTTCCTCGGGAGAAGTGAACTCGATGATCTCCGTGCAC 3773 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || || |||||||||||||||| ||||| |||||| || ||| || ||| Sbjct 3774 AAGTTCGAGGACTTGATGGTGCCGAGGTTCTGTTGGTTGGATTTACGGTTTGCTGCATCC 3833 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| | |||| || || | || ||||| || || Sbjct 3834 TTGAACAACATATATGGGTTGCCCGTCTCGACTTG 3868 >seq27800 Length=2063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||| || |||||||| || ||||||||||| | ||||| ||||| Sbjct 464 CGTCTTCTCGCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTCTGCGCTATC 523 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 || ||| | || ||||| || || |||||||| || ||| ||||||||| || | Sbjct 524 TTTTGGTTGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCTCATCGCT 583 Query 60102 CGGGACGAGGG 60112 || |||||||| Sbjct 584 CGCGACGAGGG 594 >seq4459 Length=9375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG-TTCTGTGCTATTTTCTGGCT 60049 || || ||||||||||| || ||||| ||||| ||| | |||||||| || |||| ||| Sbjct 2076 GCATTCGCATGCGTGGAGGGCATCTTTTTCTC-GGCGAGTTTCTGTGCCATATTCTTGCT 2134 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 |||||||| || | ||||| || || |||| ||||||||| || | || ||||| Sbjct 2135 GAAAAAGCGGGGATTGATGCCCGGACTAGCTTTCAGCAACGAGCTTATCGCTCGTGACGA 2194 Query 60110 GGGCCTCCATCAGG 60123 ||| | || |||| Sbjct 2195 AGGCATGCA-CAGG 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548248871455920