Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7861 176 5e-39 seq30393 167 3e-36 seq3475 84.2 2e-11 >seq7861 Length=6948 Score = 176 bits (194), Expect = 5e-39 Identities = 252/355 (71%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 |||| ||| || | |||||| | | || || ||||| | || || || ||||||| Sbjct 4986 AGACATACCACCTTATGAGCGAGCGTTGGTTCACACACGCGTCACCTACGCTCTTCAACG 4927 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 | || ||| | ||||||| || ||||||||| || | || ||||| || ||| | Sbjct 4926 CCGGCACGCCACGCCCTCAGCTGAGCAGCTGCTTCTTGATTGCAATGAAAGACGACAGTA 4867 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 |||| || |||||||| ||||| ||||||||||| || || ||| | | || || | Sbjct 4866 TCGAAGGTATCTACGACACGCTGAAGGAGTGTGCTGCAATTTCAAAGAGCGCCGGAGGGA 4807 Query 53424 TCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCG 53483 |||| || || | ||| ||||| | | | | | || ||| || ||||| Sbjct 4806 TCGGCCTCAACATCCATAACATCCGTTCTACCAGTAGTTACATTCGGGGCACCAACGGAA 4747 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 | | | || ||||| |||||||| || ||||||||| |||| ||||| || ||| | | Sbjct 4746 CCTCGAACGGCATCGTCCCTATGCTTCGTGTCTTCAACGACACTGCCCGCTATGTCGATC 4687 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 |||||||||| ||||| ||||| | |||||||||||||| || || |||||||| Sbjct 4686 AGGGTGGTGGAAAGCGAAAGGGTGCTTTCGCCATCTACCTTGAACCTTGGCACGC 4632 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||||||||| |||||||| || ||||| || || || || | |||||| || Sbjct 3013 GGCGTGCGCAACTCCCTCCTCGTGGCTCCCATGCCCACGGCCTCCACCTCGCAGATCCTG 2954 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 |||||||||||| |||||||| ||||| | ||||||||| Sbjct 2953 GGCAACAACGAGTGCTTCGAGCCTTACACAAGCAACATCTA 2913 >seq30393 Length=6106 Score = 167 bits (184), Expect = 3e-36 Identities = 358/528 (68%), Gaps = 18/528 (3%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| |||||||| | |||||||||||||| ||||| || ||||| ||| || ||||| Sbjct 876 ATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCAT 935 Query 74522 CCAGTCGAAAGGGTTCTTTG---CACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG 74578 | ||||| || ||||||| || | ||||| | |||| || ||| | | Sbjct 936 AAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATA-TCCC--AATTGTTTTAATAA 992 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||||| || || |||| ||||| | || |||| | || ||| || || | Sbjct 993 TCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCATCCG 1052 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 || || | || || |||||||| || | || || | ||| || || || Sbjct 1053 ACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATT 1112 Query 74699 GTGAA----TGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAA 74754 || | ||| | || |||| | ||| | |||| | |||| || || || | Sbjct 1113 ATGGACTATTGTTTCTG-AAGGTTTCCTTT---TTAGGTAATGAAAAAGAGTTACAGCGA 1168 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 |||| |||||| | ||||||||||| |||||| ||||| ||||| ||||| || |||| Sbjct 1169 ACTCTTGATGCAATCCTTCATCTCTTGATATCAACTCATTRGAAAAAGAAAGACCGGGCA 1228 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || || || ||||||||||| |||||||||||||||||| || | || |||| Sbjct 1229 TCAGACCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTT 1288 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCT 74934 | ||||||||||| || | | |||| ||||||| | ||| | | ||||| | | Sbjct 1289 CCACACACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATTGATCCATTTTT 1348 Query 74935 GAGCCCATTCAGCTTTTCGTTTG--ACCGCAGGGACAGTATCGATCGC 74980 ||||||| | |||||| |||| |||| ||||| || | ||||| Sbjct 1349 GAGCCCAGTATGCTTTT--TTTGAAACCGAAGGGATGGTGTGAATCGC 1394 >seq3475 Length=17180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 84172 CTCCATGGCGAAGTTGGTGTGGCGCTTGTACACGGCCTGGAAAAAGGTAACCTTGGGCTG 84231 ||||||||| || ||||||||||| || || | | |||||| | | | |||| Sbjct 2918 CTCCATGGCAAAATTGGTGTGGCGACGATAGACAACTTTGAAAAAAGAGATTTCAGGCTT 2859 Query 84232 CCCAGTCAGGTATACATCCTGCGCACCGTACGCGACGAGCTGCATAAGTCCACCTGCCAT 84291 || || | | | ||||| || ||||| || |||||||| ||||| | ||| ||| |||| Sbjct 2858 ACCTGTTAAGAAGACATCTTGAGCACCATAAGCGACGAGTTGCATTAATCCTCCTCCCAT 2799 Query 84292 TTTGTAATA-----TACCCCAAGAAAATAATTTGACTTG 84325 || ||||| ||| | ||||||||||||| || || Sbjct 2798 GTTTTAATATATATTACACAAAGAAAATAATTTTACATG 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546940729831400