Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21550 138 1e-27 seq12187 136 5e-27 seq13311 134 2e-26 seq30393 125 8e-24 seq12650 111 2e-19 seq26458 109 6e-19 seq19263 109 6e-19 seq18016 102 9e-17 seq17433 91.5 2e-13 seq9493 84.2 2e-11 seq7167 82.4 9e-11 >seq21550 Length=3044 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG-G 27464 ||||| | || ||||||| || ||||| ||||| || ||| | || || | ||| | Sbjct 2439 ATGCAGCTTTTCATCAAGACACTCACCGGAAAGACCATCACTTTGGACGT-GTGTCCTAG 2497 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| | || ||||| |||||||||||||| ||||| || || || ||||| Sbjct 2498 TGACACGATTGAGGAGTTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCCCCGGACCA 2557 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || ||||||| || || || |||||||| || Sbjct 2558 GCAGAGACTGATCTTTGCGGGAAAGCAGCTGGAGGATGGGCGCACACTGGCAGACTACAA 2617 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || || || |||| || || || || Sbjct 2618 CATCCAAAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCCGTGGGGG 2665 >seq12187 Length=9842 Score = 136 bits (150), Expect = 5e-27 Identities = 165/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT--GATA 27469 ||||| || || || || ||||| ||||| || || || ||||| ||| || | || | Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAG--AGCTCAGACA 9783 Query 27470 GCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGC 27529 |||| || ||||||| || |||||||| |||||||| || ||||| |||||||||| Sbjct 9782 CTATTGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGC 9723 Query 27530 GTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCC 27589 | | |||||||| || ||||| || ||||| | || || || || ||||| ||| ||| Sbjct 9722 GGTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCC 9663 Query 27590 AAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || || | || |||| || || || || Sbjct 9662 AGAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGTGGAGG 9620 >seq13311 Length=4779 Score = 134 bits (148), Expect = 2e-26 Identities = 122/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || ||||||||||||||||||||||| || ||||||||||| || || |||| Sbjct 4769 TGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTTATCTTTG 4710 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| |||||||| | || ||||| || ||||| ||| |||| ||||| || | Sbjct 4709 CGGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAATATCCAGAAGGAGTCTA 4650 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || | || | ||||| || || ||||| Sbjct 4649 CCCTGCACTTGGTGCTCCGTCTCCGTGGAGGACA 4616 >seq30393 Length=6106 Score = 125 bits (138), Expect = 8e-24 Identities = 295/439 (67%), Gaps = 20/439 (5%) Strand=Plus/Minus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| ||||||||||| ||| | |||||||| || |||||| | || || ||| | Sbjct 1305 AGCGTTTGCGTGTGTGGAAGGTATTCTATTTTCTGGTTCCTTCTGTGCCATATTTTGGTT 1246 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844 ||||| || || |||||||| ||||| || ||||| || ||| |||| || | || || Sbjct 1245 GAAAAAACGAGGTCTGATGCCCGGTCTTTCTTTTTCYAATGAGTTGATATCAAGAGATGA 1186 Query 64845 GGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACA 64904 || | || ||||| || || || || || || |||| || ||||| ||| Sbjct 1185 AGGATTGCATCAAGAGTTCGCTGTAACTCTTTTTCATTACCTAAAAAGGAAACCTTCA-- 1128 Query 64905 TGGGACTATAAT---TGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTAC 64961 | || ||| | | |||| ||| ||||| | | ||||| ||||| || || Sbjct 1127 -GAAACAATAGTCCATAATATCGTATCTGAAGCTGTCCAGAACGAAAAAGAATTTATCAC 1069 Query 64962 TGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAA--GATGAAACAGTATATC 65019 | | | || ||||| | || || ||| || | | || ||| | || ||| Sbjct 1068 AGAATCAATCCCATGTCGGATGATTGGTATGAAT--CAAAAATTAATGTCGGAATACATC 1011 Query 65020 GAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGG-TATTAAGCCCTACTGGAATT-CTT 65077 ||||| || |||||||| | | | || || || |||| ||| | || | Sbjct 1010 GAATTCGTTGCAGATCGATTATTAAAACAATTGGGATATT-----CTATTATCTTTGCAA 956 Query 65078 CA---AATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTG 65134 || |||||||| || | ||||| | |||||| |||| || |||||||||||||||| Sbjct 955 CAAAGAATCCATTCGATTTTATGGAAAATATCAGCTTGGATGGAAAGACTAACTTTTTTG 896 Query 65135 AAAAGAGGGTAGGTGATTA 65153 |||| || || ||||| || Sbjct 895 AAAAAAGAGTCGGTGAATA 877 >seq12650 Length=5101 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || || || ||||| ||||| || ||| || Sbjct 607 ATGCAGATTTTTGTGAAAACTCTCACAGGGAAAACAATTACCCTTGAAGTCGAGAGCAGT 666 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || ||||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 667 GATACTATCGACAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 726 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||||| || ||||| ||||| ||||| Sbjct 727 CAGCGCCTTATTTTCGCTGGAAAGCA 752 >seq26458 Length=3991 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 ||||| || ||||| ||||||||||| || ||||| || || |||||||| ||||| | | Sbjct 1967 GAGGGCATCCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGGAAGCAACTGGAGGACGGT 2026 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 || || || || ||||| ||| |||| ||||| ||||| || || || || |||| || Sbjct 2027 CGCACGCTCGCTGACTACAATATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTG 2086 Query 27625 CGCGGTGG 27632 |||||||| Sbjct 2087 CGCGGTGG 2094 >seq19263 Length=3464 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||| |||||||| ||||| |||||||||||||| | || ||||| ||||| ||||| Sbjct 2844 CAGGATAAGGAGGGGATTCCCCCAGACCAGCAGCGATTGATCTTTGCCGGTAAACAACTT 2785 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||||| |||||||| || |||||||| | |||||||| || || || || Sbjct 2784 GAGGATGGACGTACCCTTGCTGACTATAACATTCAAAAGGAGTCAACGCTGCA 2732 >seq18016 Length=3756 Score = 102 bits (112), Expect = 9e-17 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || |||||||||||||| || || || || ||||| |||||||| | ||| Sbjct 215 GGAATTCCACCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGTCGC 156 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| ||| |||||||||| ||||| || || | || | ||||| || Sbjct 155 ACTCTCGCTGACTACAATATCCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGTCTCCGM 96 Query 27628 GGTGG 27632 || || Sbjct 95 GGAGG 91 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 ||||| ||||| |||||||| || || |||||||||||||| || ||||| |||||||| Sbjct 710 ACTATCATGCAGATCTTTGTGAAAACCCTTACCGGCAAGACCATCACTCTCGAGGTTGA- 652 Query 27460 TCAGGT--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | |||| ||| ||||||| || |||||||| ||||| || Sbjct 651 -AAGCTCGGACACGATTGACAATGTGAAGGCCAAGATTCAGGATAAGGAAGG 601 >seq17433 Length=6093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || |||||||| || ||||| ||||||||||| || ||||| | || Sbjct 2821 GGAATCCCTCCTGATCAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGACGGCCGC 2880 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || || || || |||| ||||| ||||| ||||| | || | ||||| || Sbjct 2881 ACTCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTGCGT 2940 Query 27628 GGTGG 27632 ||||| Sbjct 2941 GGTGG 2945 >seq9493 Length=6168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || |||||||| || |||||||| ||||| Sbjct 947 ATGCAGATTTTTGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 1006 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| ||| | ||||| || |||||||||||||| || Sbjct 1007 GATACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGG 1050 >seq7167 Length=7357 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 18620 GAAAGTTTGGTATGCACCGAACCAGTTCGAGGCCTATGGCGAAGAAGAGATCAAGGCGGT 18679 |||||| ||||||||||| || |||||||||| ||||||||||| |||||||||||||| Sbjct 3125 GAAAGTGTGGTATGCACCCCACAAGTTCGAGGCGTATGGCGAAGACGAGATCAAGGCGGT 3184 Query 18680 CGA 18682 || Sbjct 3185 GGA 3187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570023512482160