Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8895 129 4e-25 seq19263 96.9 2e-15 >seq8895 Length=8815 Score = 129 bits (142), Expect = 4e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || ||||| || ||||| ||||| ||||| | ||||| ||| Sbjct 797 AGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGC 738 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| |||||||| || || ||||| || | |||||||| || || | ||| || Sbjct 737 CCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCT 678 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || ||| | ||| ||||| ||||| || |||| ||| Sbjct 677 TTGTCT-TGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGT 619 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || ||||| || | |||||||||||| ||||||||| || Sbjct 618 GATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATGGTG 576 >seq19263 Length=3464 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||||||||||||||| || | ||| || || | || ||| Sbjct 2726 ACCAAGTGCAGCGTTGACTCCTTTTGAATGTTATAGTCAGCAAGGGTACGTCCATCCTCA 2785 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||||||||||||||| || || ||||| ||||| || || | |||||||| || Sbjct 2786 AGTTGTTTACCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCCTTATC 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314575237228619