Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8895 125 6e-24 seq195 116 3e-21 >seq8895 Length=8815 Score = 125 bits (138), Expect = 6e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| ||||| ||||| || || || ||| | || || | || || || Sbjct 575 ACACCATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGA 634 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || ||| | ||||| | ||||| |||||||||||||||||||| || ||||| | Sbjct 635 GTTCTGACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTG 694 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | ||||| | || |||| ||| ||||||||| |||||||| | ||| | | |||| Sbjct 695 ACCAACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATT 754 Query 27163 ACAACATTCAAAAGGAGTCGAC 27184 ||||||| ||||| || || || Sbjct 755 ACAACATCCAAAAAGAATCTAC 776 >seq195 Length=29407 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||| | |||||| | || || || |||| || || || || ||| | || Sbjct 26996 CATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTC 27055 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | || || ||||| || || || ||||| || |||||||| || Sbjct 27056 AGATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCA 27115 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | || || ||||||||||||||| | || | |||||||| Sbjct 27116 ACAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAA 27175 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || ||||| || || ||||||||| | || |||||||| Sbjct 27176 TATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTT 27214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434699619735360