Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq13554 107 2e-18 >seq13554 Length=8015 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || | || | |||| |||| || || |||||||||||||| ||||| || | ||| Sbjct 4608 TGCGCAAGCAAGCACGTCAGCAATGCATAGCTAGCAATGTTGAATGGCACGCCGAGGCCC 4667 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || ||||| | |||||| |||| ||||||||| || |||||||| || Sbjct 4668 ATGTCTCCAGACCGCTGATACATCTGGCAAGACAACTCCCCATTTGCCACGTAGAACTGT 4727 Query 6740 CAGAGGGTGTGGCA 6753 | || |||| ||| Sbjct 4728 CCAAGTGTGTTGCA 4741 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34592 TGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAA 34651 ||| |||| || | || |||||||| || ||||||||| |||| |||||| | ||||| Sbjct 4741 TGCAACACACTTGGACAGTTCTACGTGGCAAATGGGGAGTTGTCTTGCCAGATGTATCAG 4682 Query 34652 CGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACG 34711 || || ||||||||||| | || ||||| |||||||||||||| || || |||| ||| Sbjct 4681 CGGTCTGGAGACATGGGCCTCGGCGTGCCATTCAACATTGCTAGCTATGCATTGCTGACG 4622 Query 34712 TACATGATCGCTCA 34725 | | || | || || Sbjct 4621 TGCTTGCTTGCGCA 4608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448036907202960