Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq8895 163 7e-35 seq12187 138 3e-27 seq13311 116 9e-21 seq21550 109 1e-18 seq195 104 5e-17 seq18016 98.7 2e-15 seq37070 96.9 8e-15 seq9493 89.7 1e-12 >seq8895 Length=8815 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||||||||| || |||||||||||||| ||||| || || Sbjct 804 TCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAG 745 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||| || |||||||| || ||||| ||||| || | | |||||||||||| || | Sbjct 744 TGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGAT 685 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| ||||| || || || || ||||| || || |||||||| || || ||||| Sbjct 684 TCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTC 625 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || || || || ||||| | |||||| Sbjct 624 CAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq12187 Length=9842 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || |||||||| || ||||| || || ||||| || Sbjct 9622 TCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAG 9681 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || ||||||||||| || || || || | || || ||||| ||||| | Sbjct 9682 AGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGAT 9741 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| ||||| ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 9742 GCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTC 9801 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| || ||||| || ||||| || Sbjct 9802 CAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAA 9837 >seq13311 Length=4779 Score = 116 bits (128), Expect = 9e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || ||||| || || || || || Sbjct 4621 TCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAG 4680 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || ||||||||||| || ||||||||||| || |||||||| |||| Sbjct 4681 GGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGAAT 4740 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||| ||||||||||| ||||| |||||||| || || Sbjct 4741 TCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAAT 4779 >seq21550 Length=3044 Score = 109 bits (120), Expect = 1e-18 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| ||||||||||| || || || || || | ||||| Sbjct 2650 AGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATCC 2591 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || ||||| || || | || || |||||| Sbjct 2590 TCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCC 2531 Query 211023 TGGATCTTTTG--TTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGTGATC 211079 || || ||| | ||| || | || || |||||| || | || || | |||||| Sbjct 2530 TGAAT-TTTCGCCTTTAAC-TCCTCAATCGTGTCACTAGGACAC-ACGTCCAAAGTGATG 2474 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| | || | |||||| Sbjct 2473 GTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq195 Length=29407 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| || || ||||| | | || || || ||||||| || || ||| Sbjct 27193 GTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCT 27134 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | ||||||||||| || || | ||||||||| |||||||| || || Sbjct 27133 GCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTT 27074 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || || || || |||||| ||||| || || || || || || | ||| Sbjct 27073 ACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTT 27014 Query 211098 TTTACAAACACCTGCAT 211114 || | ||| | ||||| Sbjct 27013 TTGATAAATATTTGCAT 26997 >seq18016 Length=3756 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| ||||| ||||| ||||| || || || ||||| ||||||||||||||| Sbjct 601 CCTTCCTTATCCTGAATCTTGGCCTTCACATTGTCAATCGTGTCCGAGCTTTCAACCTCG 660 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || || || || ||||| | |||||| Sbjct 661 AGAGTGATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 704 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| |||||||| || || || || || || | || || Sbjct 106 AGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCGAGAGTGCGACCGTCC 165 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||||||| |||||||| || || || |||||||| |||| |||| || Sbjct 166 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTGCC 219 >seq37070 Length=1165 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC------AGC 210968 || ||| | || ||| |||||||| | | ||||| || | ||| | ||| ||| Sbjct 667 AGTGTGAATTCCTTTCGGATGTTACAGTTAGCAAGCGTGCGTCCCGCGTCCTACTCCAGC 608 Query 210969 TGCTT---GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC---CTTCCTTGTCC 211022 ||||| ||| ||||| |||||||| || |||| ||||| | | | ||||| ||| Sbjct 607 TGCTTCCGGCCCGCGAAAATAAGGCGCTGCTGGTTGGGAGGGATACGAGCCTCCTTCTCC 548 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || | |||| || || || |||||||||||||| ||||||| ||||| | Sbjct 547 TGATTCGTGGCCTTCAGCTTGTCTATTGTGTCAGAGCTTTCCACCTCGAAGGTGATGGGT 488 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| |||||||| | ||||| Sbjct 487 TTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 456 >seq9493 Length=6168 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || | ||| | ||||| || ||||||||||| |||||||| Sbjct 1327 TTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 1268 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||| ||||||||||||| |||| Sbjct 1267 AGGCGTTGCTGGTCAGGAGGAATTCCT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158554325652695