Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq195 89.7 4e-13 seq12187 86.0 5e-12 seq18016 82.4 7e-11 seq13311 82.4 7e-11 >seq195 Length=29407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || ||||| | ||||| || |||||||||||||| ||||| | Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||||| |||| || | ||||| || ||||| || | || || ||||||| ||| Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || || ||| |||||| || | | | | |||||| || || ||| Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || ||| |||| || || | ||||| | ||| |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq12187 Length=9842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 |||||||| | | ||| | |||||| || |||||| ||| || || ||||| || || Sbjct 9617 AAGCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCC 9676 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTG 39174 || || || || |||| || ||||| || || ||||| || | ||||||||||||| Sbjct 9677 GCCAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGA 9736 Query 39175 GGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGA 39230 || | || ||| || ||| ||| | | | | ||| | | | || || ||| Sbjct 9737 GGGATGCCCTCCTTATCC-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCT--- 9792 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||||| |||| |||||| | || || || || ||||| || ||||| Sbjct 9793 CTCCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq18016 Length=3756 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | || | |||||| || || ||| ||| ||||| ||||| || || || Sbjct 91 CCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCG 150 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || |||| || ||||| |||||||| || || |||||||||||||| ||||| Sbjct 151 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGG 209 >seq13311 Length=4779 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || ||||| || || || || || || |||| || Sbjct 4636 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGGCCGTCCTC 4695 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||| ||||||||||| ||||| ||||||||||| | ||| | | ||| |||||| Sbjct 4696 GAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 4753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334924393859