Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8895 104 2e-17 seq195 104 2e-17 seq12187 91.5 1e-13 >seq8895 Length=8815 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| | || || || | Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || |||||| ||||||||||| | || || || ||| Sbjct 640 GACACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAA 699 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || ||||| || ||||||||||||||||||| || || | | ||||||||| Sbjct 700 CAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAAC 759 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 760 ATCCAAAAAGAATCTAC 776 >seq195 Length=29407 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || | ||||| | || || ||||| || || ||||| ||||| || | Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| ||||| || || ||||| | || || || ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || |||||| ||||||||| | || || || |||||||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||| || || |||||| | || || | || ||||||| Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGG 27223 >seq12187 Length=9842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23615 AGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACA 23674 |||| ||||| ||||||||||| || || || ||||| || || || || | | |||| Sbjct 9842 AGATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACA 9783 Query 23675 CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGC 23734 || |||| | | || || ||| || || || || | || || || || |||| Sbjct 9782 CTATTGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGC 9723 Query 23735 GTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATAC 23794 | || || |||||||| || || ||||| |||| |||||| | | || ||||| || | Sbjct 9722 GGTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCC 9663 Query 23795 AAAAAGAGTCCAC 23807 | || |||||||| Sbjct 9662 AGAAGGAGTCCAC 9650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337843819283444